Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   SGQ72_RS05655 Genome accession   NZ_CP138881
Coordinates   1185352..1186224 (+) Length   290 a.a.
NCBI ID   WP_000620187.1    Uniprot ID   A0AAE2ZTP9
Organism   Staphylococcus aureus strain 263     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1180352..1191224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGQ72_RS05635 (SGQ72_05635) sucC 1180466..1181632 (+) 1167 WP_001020802.1 ADP-forming succinate--CoA ligase subunit beta -
  SGQ72_RS05640 (SGQ72_05640) sucD 1181654..1182562 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  SGQ72_RS05645 (SGQ72_05645) - 1182789..1183907 (+) 1119 WP_001041672.1 LysM peptidoglycan-binding domain-containing protein -
  SGQ72_RS05650 (SGQ72_05650) fmhC 1183935..1185179 (+) 1245 WP_000673439.1 FemA/FemB family glycyltransferase FmhC -
  SGQ72_RS05655 (SGQ72_05655) dprA 1185352..1186224 (+) 873 WP_000620187.1 DNA-processing protein DprA Machinery gene
  SGQ72_RS05660 (SGQ72_05660) topA 1186398..1188473 (+) 2076 WP_353059328.1 type I DNA topoisomerase -
  SGQ72_RS05665 (SGQ72_05665) trmFO 1188629..1189936 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33609.00 Da        Isoelectric Point: 9.5142

>NTDB_id=905588 SGQ72_RS05655 WP_000620187.1 1185352..1186224(+) (dprA) [Staphylococcus aureus strain 263]
MIRLFLLKLYWSHFSTKQIHQFLMAYPNVIKEEGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=905588 SGQ72_RS05655 WP_000620187.1 1185352..1186224(+) (dprA) [Staphylococcus aureus strain 263]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGTCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGAGGGAAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATTCTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

99.31

100

0.993
  dprA Staphylococcus aureus N315

98.966

100

0.99
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

38.163

97.586

0.372
  dprA/cilB/dalA Streptococcus pneumoniae D39

38.163

97.586

0.372
  dprA/cilB/dalA Streptococcus pneumoniae R6

38.163

97.586

0.372
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

38.163

97.586

0.372
  dprA/cilB/dalA Streptococcus mitis SK321

37.809

97.586

0.369