Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABLC00_RS17515 Genome accession   NZ_CP157432
Coordinates   3734778..3735362 (-) Length   194 a.a.
NCBI ID   WP_002053972.1    Uniprot ID   A0AA36NV74
Organism   Acinetobacter nosocomialis strain XH1679     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3729778..3740362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLC00_RS17490 (ABLC00_17490) - 3729792..3731291 (+) 1500 WP_006582485.1 PLP-dependent aminotransferase family protein -
  ABLC00_RS17495 (ABLC00_17495) - 3731357..3732799 (-) 1443 WP_006582484.1 amino acid permease -
  ABLC00_RS17500 (ABLC00_17500) - 3733105..3733653 (-) 549 WP_006582483.1 helix-turn-helix domain-containing protein -
  ABLC00_RS17505 (ABLC00_17505) - 3733722..3734417 (+) 696 WP_006582482.1 AzlC family ABC transporter permease -
  ABLC00_RS17510 (ABLC00_17510) - 3734414..3734737 (+) 324 WP_006582481.1 AzlD domain-containing protein -
  ABLC00_RS17515 (ABLC00_17515) ssb 3734778..3735362 (-) 585 WP_002053972.1 single-stranded DNA-binding protein Machinery gene
  ABLC00_RS17520 (ABLC00_17520) - 3735414..3736778 (-) 1365 WP_004711530.1 MFS transporter -
  ABLC00_RS17525 (ABLC00_17525) - 3736925..3738007 (-) 1083 WP_002054048.1 DUF475 domain-containing protein -
  ABLC00_RS17530 (ABLC00_17530) tenA 3738271..3738945 (+) 675 WP_000899420.1 thiaminase II -
  ABLC00_RS17535 (ABLC00_17535) - 3738996..3739337 (-) 342 WP_348941003.1 GlpM family protein -
  ABLC00_RS17540 (ABLC00_17540) - 3739390..3739743 (-) 354 WP_000580165.1 DUF1304 domain-containing protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21008.83 Da        Isoelectric Point: 6.4822

>NTDB_id=905487 ABLC00_RS17515 WP_002053972.1 3734778..3735362(-) (ssb) [Acinetobacter nosocomialis strain XH1679]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKTSGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNQGGGYGQNNGGGYGGQGG
FGNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=905487 ABLC00_RS17515 WP_002053972.1 3734778..3735362(-) (ssb) [Acinetobacter nosocomialis strain XH1679]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTAACCCAGTTTTCAATCGCGACAAGTGAAGTTTGGACCGATAAAACGTCAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTATATCGAAGGT
TCATTACGTACGCGTCAGTGGACAGACCAAAATGGTCAGGAACGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCACCTCAAC
AAGGTGGCGGTTATCAAAATAACAACCAAGGTGGCGGCTACGGTCAAAACAATGGCGGTGGTTATGGTGGCCAAGGTGGT
TTCGGTAATGGTGGCAACAGCCCGCAAGGTGGTGGTTTTGCTCCTAAAGCGCCGCAACAACCAGCGTCTGCACCAGCTGA
TTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36NV74

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.746

100

0.526
  ssb Vibrio cholerae strain A1552

43.5

100

0.448
  ssb Neisseria meningitidis MC58

37.563

100

0.381
  ssb Neisseria gonorrhoeae MS11

37.563

100

0.381