Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SGW60_RS13105 Genome accession   NZ_CP138667
Coordinates   2650801..2651196 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DA70900     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2645801..2656196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW60_RS13075 - 2647003..2647407 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  SGW60_RS13080 - 2647802..2647894 (+) 93 WP_001790611.1 hypothetical protein -
  SGW60_RS13085 - 2648026..2648259 (+) 234 WP_000384522.1 DUF1146 family protein -
  SGW60_RS13090 murA 2648370..2649635 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SGW60_RS13095 fabZ 2649669..2650109 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SGW60_RS13100 - 2650167..2650607 (-) 441 WP_000846746.1 YwpF-like family protein -
  SGW60_RS13105 ssb 2650801..2651196 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  SGW60_RS13110 sceD 2651585..2652280 (+) 696 WP_000752001.1 lytic transglycosylase SceD -
  SGW60_RS13115 tenA 2652666..2653355 (+) 690 WP_000396067.1 thiaminase II -
  SGW60_RS13120 thiD 2653348..2654178 (+) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SGW60_RS13125 thiM 2654162..2654953 (+) 792 WP_001108482.1 hydroxyethylthiazole kinase -
  SGW60_RS13130 thiE 2654955..2655596 (+) 642 WP_000483156.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=904400 SGW60_RS13105 WP_000932694.1 2650801..2651196(+) (ssb) [Staphylococcus aureus strain DA70900]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=904400 SGW60_RS13105 WP_000932694.1 2650801..2651196(+) (ssb) [Staphylococcus aureus strain DA70900]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992