Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | SGW62_RS13530 | Genome accession | NZ_CP138662 |
| Coordinates | 2731571..2732041 (+) | Length | 156 a.a. |
| NCBI ID | WP_000610648.1 | Uniprot ID | A0A090M1W2 |
| Organism | Staphylococcus aureus strain DA70520 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2714060..2737373 | 2731571..2732041 | within | 0 |
Gene organization within MGE regions
Location: 2714060..2737373
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SGW62_RS13400 | - | 2714060..2714906 (+) | 847 | Protein_2597 | class I SAM-dependent methyltransferase | - |
| SGW62_RS13405 | - | 2715278..2716501 (-) | 1224 | WP_000206621.1 | ArgE/DapE family deacylase | - |
| SGW62_RS13410 | lukH | 2716937..2717989 (+) | 1053 | WP_000791419.1 | bi-component leukocidin LukGH subunit H | - |
| SGW62_RS13415 | lukG | 2718011..2719027 (+) | 1017 | WP_000595326.1 | bi-component leukocidin LukGH subunit G | - |
| SGW62_RS13420 | sph | 2719265..2720095 (-) | 831 | Protein_2601 | sphingomyelin phosphodiesterase | - |
| SGW62_RS13425 | - | 2720146..2721183 (-) | 1038 | WP_000857191.1 | site-specific integrase | - |
| SGW62_RS13430 | - | 2721242..2721706 (-) | 465 | WP_000825947.1 | hypothetical protein | - |
| SGW62_RS13435 | - | 2721806..2721988 (-) | 183 | WP_000705248.1 | hypothetical protein | - |
| SGW62_RS13440 | - | 2722192..2722533 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| SGW62_RS13445 | - | 2722539..2723471 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| SGW62_RS13450 | - | 2723487..2724200 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| SGW62_RS13455 | - | 2724163..2724336 (+) | 174 | WP_001801500.1 | hypothetical protein | - |
| SGW62_RS13460 | - | 2724333..2724596 (+) | 264 | WP_000854073.1 | helix-turn-helix transcriptional regulator | - |
| SGW62_RS13465 | - | 2724612..2724827 (+) | 216 | WP_001025404.1 | MW1434 family type I TA system toxin | - |
| SGW62_RS13470 | - | 2724816..2725145 (-) | 330 | WP_000128907.1 | hypothetical protein | - |
| SGW62_RS13475 | - | 2725196..2725948 (+) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| SGW62_RS13480 | - | 2725964..2726161 (+) | 198 | WP_001148862.1 | hypothetical protein | - |
| SGW62_RS13485 | - | 2726148..2726528 (-) | 381 | WP_000762519.1 | DUF2513 domain-containing protein | - |
| SGW62_RS13490 | - | 2726583..2726906 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| SGW62_RS13495 | - | 2726903..2727064 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| SGW62_RS13500 | - | 2727159..2727461 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| SGW62_RS13505 | - | 2727466..2727726 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| SGW62_RS13510 | - | 2727735..2727998 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| SGW62_RS13515 | - | 2728007..2729950 (+) | 1944 | WP_000700555.1 | AAA family ATPase | - |
| SGW62_RS13520 | - | 2729952..2730872 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| SGW62_RS13525 | - | 2730953..2731570 (+) | 618 | WP_073394849.1 | MBL fold metallo-hydrolase | - |
| SGW62_RS13530 | ssbA | 2731571..2732041 (+) | 471 | WP_000610648.1 | single-stranded DNA-binding protein | Machinery gene |
| SGW62_RS13535 | - | 2732071..2732964 (+) | 894 | WP_000148321.1 | DnaD domain-containing protein | - |
| SGW62_RS13540 | - | 2732971..2733189 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| SGW62_RS13545 | - | 2733198..2733602 (+) | 405 | WP_000401960.1 | RusA family crossover junction endodeoxyribonuclease | - |
| SGW62_RS13550 | - | 2733615..2733983 (+) | 369 | WP_000101288.1 | SA1788 family PVL leukocidin-associated protein | - |
| SGW62_RS13555 | - | 2733987..2734229 (+) | 243 | WP_000131370.1 | SAV1978 family virulence-associated passenger protein | - |
| SGW62_RS13560 | - | 2734244..2734498 (+) | 255 | WP_001065097.1 | DUF1024 family protein | - |
| SGW62_RS13565 | - | 2734485..2734655 (+) | 171 | WP_000714403.1 | hypothetical protein | - |
| SGW62_RS13570 | - | 2734648..2735184 (+) | 537 | WP_001066447.1 | dUTP diphosphatase | - |
| SGW62_RS13575 | - | 2735221..2735466 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| SGW62_RS13580 | - | 2735463..2735669 (+) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| SGW62_RS13585 | - | 2735666..2736052 (+) | 387 | WP_000592207.1 | hypothetical protein | - |
| SGW62_RS13590 | - | 2736049..2736198 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| SGW62_RS13595 | - | 2736198..2736398 (+) | 201 | WP_001622114.1 | DUF1514 family protein | - |
| SGW62_RS13600 | - | 2736426..2736842 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| SGW62_RS13605 | - | 2737074..2737373 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=904235 SGW62_RS13530 WP_000610648.1 2731571..2732041(+) (ssbA) [Staphylococcus aureus strain DA70520]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=904235 SGW62_RS13530 WP_000610648.1 2731571..2732041(+) (ssbA) [Staphylococcus aureus strain DA70520]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.558 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |