Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | SGW65_RS01775 | Genome accession | NZ_CP138661 |
| Coordinates | 389627..390130 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain DA70870 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 385564..411768 | 389627..390130 | within | 0 |
Gene organization within MGE regions
Location: 385564..411768
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SGW65_RS01745 | - | 385564..386409 (+) | 846 | WP_001550052.1 | ParB/RepB/Spo0J family partition protein | - |
| SGW65_RS01750 | - | 386566..387447 (+) | 882 | WP_001077602.1 | mechanosensitive ion channel family protein | - |
| SGW65_RS01755 | - | 387477..387680 (+) | 204 | WP_000157345.1 | DUF951 domain-containing protein | - |
| SGW65_RS01760 | ychF | 387692..388789 (+) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| SGW65_RS01765 | - | 388875..389066 (-) | 192 | WP_001052483.1 | hypothetical protein | - |
| SGW65_RS01770 | rpsF | 389310..389606 (+) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| SGW65_RS01775 | ssbA | 389627..390130 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| SGW65_RS01780 | rpsR | 390182..390424 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| SGW65_RS01785 | - | 390606..391436 (-) | 831 | WP_000357934.1 | KilA-N domain-containing protein | - |
| SGW65_RS01790 | - | 391919..393136 (-) | 1218 | WP_000270130.1 | site-specific integrase | - |
| SGW65_RS01795 | - | 393589..394161 (-) | 573 | WP_001661454.1 | helix-turn-helix transcriptional regulator | - |
| SGW65_RS01800 | - | 394333..394554 (+) | 222 | WP_000560872.1 | helix-turn-helix transcriptional regulator | - |
| SGW65_RS01805 | - | 394555..394827 (+) | 273 | WP_000124597.1 | helix-turn-helix domain-containing protein | - |
| SGW65_RS01810 | - | 394839..394994 (+) | 156 | WP_000784891.1 | hypothetical protein | - |
| SGW65_RS01815 | - | 394979..395182 (+) | 204 | WP_001231375.1 | hypothetical protein | - |
| SGW65_RS01820 | - | 395184..395567 (+) | 384 | WP_000695075.1 | hypothetical protein | - |
| SGW65_RS01825 | - | 395568..395861 (+) | 294 | WP_001103971.1 | DUF1474 family protein | - |
| SGW65_RS01830 | - | 395949..396818 (+) | 870 | WP_001002696.1 | primase alpha helix C-terminal domain-containing protein | - |
| SGW65_RS01835 | - | 396832..398541 (+) | 1710 | WP_000447476.1 | DUF927 domain-containing protein | - |
| SGW65_RS01840 | - | 398871..399251 (+) | 381 | WP_000356931.1 | hypothetical protein | - |
| SGW65_RS01845 | - | 399248..399889 (+) | 642 | WP_338428316.1 | pathogenicity island protein | - |
| SGW65_RS01850 | - | 400425..400766 (+) | 342 | WP_001190606.1 | hypothetical protein | - |
| SGW65_RS01855 | - | 400778..401356 (+) | 579 | WP_000846280.1 | hypothetical protein | - |
| SGW65_RS01860 | - | 401374..401592 (+) | 219 | WP_000448770.1 | capsid morphogenesis B protein | - |
| SGW65_RS01865 | - | 401643..402170 (+) | 528 | WP_338428319.1 | spore coat protein | - |
| SGW65_RS01870 | - | 402173..402514 (+) | 342 | WP_000358778.1 | hypothetical protein | - |
| SGW65_RS01875 | - | 402511..403080 (+) | 570 | WP_001293080.1 | terminase small subunit | - |
| SGW65_RS01880 | - | 403127..403210 (+) | 84 | Protein_373 | terminase small subunit | - |
| SGW65_RS01885 | - | 403357..404325 (+) | 969 | WP_000801979.1 | Abi family protein | - |
| SGW65_RS01890 | - | 404809..404930 (+) | 122 | Protein_375 | hypothetical protein | - |
| SGW65_RS01895 | - | 405173..405325 (+) | 153 | WP_001795626.1 | hypothetical protein | - |
| SGW65_RS01900 | - | 405396..405506 (+) | 111 | WP_000139423.1 | hypothetical protein | - |
| SGW65_RS01905 | - | 405508..405693 (+) | 186 | WP_001286805.1 | hypothetical protein | - |
| SGW65_RS01910 | - | 406832..407769 (-) | 938 | Protein_379 | Abi family protein | - |
| SGW65_RS01915 | - | 407808..408515 (-) | 708 | Protein_380 | tyrosine-type recombinase/integrase | - |
| SGW65_RS01920 | selX | 408715..409326 (+) | 612 | WP_000475326.1 | staphylococcal enterotoxin-like toxin X | - |
| SGW65_RS01925 | - | 409695..410063 (+) | 369 | WP_000849177.1 | YxeA family protein | - |
| SGW65_RS01930 | - | 410244..410816 (+) | 573 | WP_000769720.1 | PepSY domain-containing protein | - |
| SGW65_RS01935 | - | 410954..411217 (-) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| SGW65_RS01940 | - | 411517..411768 (+) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=904156 SGW65_RS01775 WP_000934799.1 389627..390130(+) (ssbA) [Staphylococcus aureus strain DA70870]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=904156 SGW65_RS01775 WP_000934799.1 389627..390130(+) (ssbA) [Staphylococcus aureus strain DA70870]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |