Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Cthiooxydans_RS25560 Genome accession   NZ_AP025193
Coordinates   5539109..5539657 (-) Length   182 a.a.
NCBI ID   WP_003064700.1    Uniprot ID   A0A5S4SNL5
Organism   Comamonas thiooxydans strain NR4028     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5534109..5544657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Cthiooxydans_RS25535 (Cthiooxydans_49690) - 5534142..5535788 (-) 1647 WP_087865885.1 M48 family metalloprotease -
  Cthiooxydans_RS25540 (Cthiooxydans_49700) moaC 5535989..5536462 (+) 474 WP_087865884.1 cyclic pyranopterin monophosphate synthase MoaC -
  Cthiooxydans_RS25545 (Cthiooxydans_49710) - 5537418..5537885 (-) 468 WP_276573942.1 pilin -
  Cthiooxydans_RS25555 (Cthiooxydans_49720) - 5538073..5538792 (-) 720 WP_087865344.1 FHA domain-containing protein -
  Cthiooxydans_RS25560 (Cthiooxydans_49730) ssb 5539109..5539657 (-) 549 WP_003064700.1 single-stranded DNA-binding protein Machinery gene
  Cthiooxydans_RS25565 (Cthiooxydans_49740) - 5539930..5541102 (-) 1173 WP_087865346.1 MFS transporter -
  Cthiooxydans_RS25570 (Cthiooxydans_49750) uvrA 5541329..5544397 (+) 3069 WP_229227804.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20057.22 Da        Isoelectric Point: 5.9603

>NTDB_id=90413 Cthiooxydans_RS25560 WP_003064700.1 5539109..5539657(-) (ssb) [Comamonas thiooxydans strain NR4028]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENREATEWHRVVFNGKLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADAMQMLGSRQGGGQQQGGYGSDDGYGESSYEAPRRQAPAPMQQRPAPAPMQQRPAPA
PMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=90413 Cthiooxydans_RS25560 WP_003064700.1 5539109..5539657(-) (ssb) [Comamonas thiooxydans strain NR4028]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAATCTGGGTCGTGACCCCGAAATGCGCACCTTCCCCAGCGGCGATCA
GGTGGCCAATGTGACCATCGCCACCACAGACCGCTGGCGCGACAAGAACACCGGAGAAAACCGCGAAGCCACCGAATGGC
ACCGTGTGGTCTTCAACGGCAAACTGGCCGAAATCGTGGGCCAGTACCTGCGCAAAGGCAGCCAGGTCTATGTGGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGACCAGGCCTCCGGCCAGGAACGCTACGCTACCGAAATCCGTGCCGACGCCATGCA
GATGCTGGGCAGCCGCCAGGGCGGTGGTCAGCAGCAAGGCGGCTACGGCAGCGATGATGGCTATGGCGAAAGCAGCTACG
AAGCACCCCGCCGTCAGGCTCCCGCTCCCATGCAGCAGCGCCCTGCACCTGCACCCATGCAGCAGCGTCCTGCTCCTGCA
CCCATGGCTCCTCCTCCCCAGCGCGCAGCTTCGGGGTTTGACGACATGGATGACGATATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5S4SNL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.886

100

0.571
  ssb Glaesserella parasuis strain SC1401

51.562

100

0.544
  ssb Neisseria gonorrhoeae MS11

47.514

99.451

0.473
  ssb Neisseria meningitidis MC58

44.565

100

0.451

Multiple sequence alignment