Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SHN03_RS01865 Genome accession   NZ_CP138566
Coordinates   412515..413018 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain AUSMDU00020487     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 407515..418018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHN03_RS01835 - 408455..409300 (+) 846 WP_001621659.1 ParB/RepB/Spo0J family partition protein -
  SHN03_RS01840 - 409454..410335 (+) 882 WP_000373079.1 mechanosensitive ion channel family protein -
  SHN03_RS01845 - 410365..410568 (+) 204 WP_000157348.1 DUF951 domain-containing protein -
  SHN03_RS01850 ychF 410580..411677 (+) 1098 WP_031874981.1 redox-regulated ATPase YchF -
  SHN03_RS01855 - 411763..411954 (-) 192 WP_001052483.1 hypothetical protein -
  SHN03_RS01860 rpsF 412198..412494 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  SHN03_RS01865 ssbA 412515..413018 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  SHN03_RS01870 rpsR 413070..413312 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  SHN03_RS01875 - 413550..414557 (-) 1008 Protein_371 Abi family protein -
  SHN03_RS01880 - 414563..415276 (-) 714 Protein_372 tyrosine-type recombinase/integrase -
  SHN03_RS01885 - 415475..416092 (+) 618 WP_029549319.1 exotoxin beta-grasp domain-containing protein -
  SHN03_RS01890 - 416458..416826 (+) 369 WP_000849162.1 YxeA family protein -
  SHN03_RS01895 - 417007..417579 (+) 573 WP_000769722.1 PepSY domain-containing protein -
  SHN03_RS01900 - 417717..417980 (-) 264 WP_001055897.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=903465 SHN03_RS01865 WP_000934799.1 412515..413018(+) (ssbA) [Staphylococcus aureus strain AUSMDU00020487]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=903465 SHN03_RS01865 WP_000934799.1 412515..413018(+) (ssbA) [Staphylococcus aureus strain AUSMDU00020487]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATC
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365