Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RZE78_RS02115 Genome accession   NZ_CP138515
Coordinates   459188..459754 (+) Length   188 a.a.
NCBI ID   WP_319428884.1    Uniprot ID   -
Organism   Variovorax paradoxus strain 2u118     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 454188..464754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZE78_RS02105 (RZE78_02105) - 454948..455838 (-) 891 WP_319428880.1 DMT family transporter -
  RZE78_RS02110 (RZE78_02110) uvrA 455894..459037 (-) 3144 WP_319428882.1 excinuclease ABC subunit UvrA -
  RZE78_RS02115 (RZE78_02115) ssb 459188..459754 (+) 567 WP_319428884.1 single-stranded DNA-binding protein Machinery gene
  RZE78_RS02120 (RZE78_02120) - 459813..461789 (+) 1977 WP_319428886.1 sensor histidine kinase -
  RZE78_RS02125 (RZE78_02125) - 461802..462242 (-) 441 WP_319428888.1 GFA family protein -
  RZE78_RS02130 (RZE78_02130) - 462261..462980 (-) 720 WP_319428890.1 YebC/PmpR family DNA-binding transcriptional regulator -
  RZE78_RS02135 (RZE78_02135) - 463334..463714 (+) 381 WP_319428892.1 helicase SNF2 -
  RZE78_RS02140 (RZE78_02140) - 463770..464063 (+) 294 WP_319428894.1 hypothetical protein -
  RZE78_RS02145 (RZE78_02145) - 464075..464674 (+) 600 WP_319428896.1 DUF6891 domain-containing protein -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 19639.54 Da        Isoelectric Point: 5.9554

>NTDB_id=903278 RZE78_RS02115 WP_319428884.1 459188..459754(+) (ssb) [Variovorax paradoxus strain 2u118]
MASVNKVIVVGNLGRDPEMRTFPSGDQVANVTVATTDRWKDKQSGEMREATEWHRIVFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDKDGIEKYTTEIRADQMQMLGSRQGQGGPSGGPEDDGGYSQGGGGGGGYSQGASGGGGGGGGGYAPRAPAAA
PRAPAPAPRQAPAKSSSGFDDMDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=903278 RZE78_RS02115 WP_319428884.1 459188..459754(+) (ssb) [Variovorax paradoxus strain 2u118]
ATGGCATCGGTCAACAAAGTCATCGTCGTCGGCAACCTGGGGCGCGACCCCGAAATGCGTACCTTCCCGAGCGGCGACCA
GGTCGCGAACGTCACCGTGGCCACCACCGATCGCTGGAAAGACAAGCAAAGCGGCGAAATGCGCGAGGCCACCGAGTGGC
ACCGCATCGTCTTCAACGGCCGCCTGGCCGAAATCGCCGGCCAATACCTGCGCAAGGGCTCGCAGGTGTACGTCGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACAAGGACGGCATCGAGAAATACACCACCGAAATCCGCGCCGACCAGATGCAGAT
GCTGGGCAGCCGCCAAGGCCAGGGCGGCCCCTCGGGCGGGCCCGAGGACGACGGCGGCTATTCGCAGGGCGGCGGTGGTG
GCGGCGGCTACTCGCAAGGCGCCAGCGGTGGTGGCGGTGGCGGTGGCGGCGGCTATGCCCCCCGCGCACCGGCCGCGGCA
CCGCGCGCTCCGGCGCCGGCACCGCGCCAGGCTCCGGCCAAGTCGTCGTCGGGCTTCGACGACATGGACGACGACATTCC
GTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.356

100

0.532
  ssb Vibrio cholerae strain A1552

45.361

100

0.468
  ssb Neisseria gonorrhoeae MS11

45.699

98.936

0.452
  ssb Neisseria meningitidis MC58

44.624

98.936

0.441