Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RZE77_RS01935 Genome accession   NZ_CP138513
Coordinates   431910..432461 (+) Length   183 a.a.
NCBI ID   WP_319440458.1    Uniprot ID   -
Organism   Variovorax paradoxus strain SPNA7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 426910..437461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZE77_RS01920 (RZE77_01920) - 426911..427666 (+) 756 WP_319440455.1 GntR family transcriptional regulator -
  RZE77_RS01925 (RZE77_01925) - 427674..428564 (-) 891 WP_319440456.1 DMT family transporter -
  RZE77_RS01930 (RZE77_01930) uvrA 428616..431759 (-) 3144 WP_319440457.1 excinuclease ABC subunit UvrA -
  RZE77_RS01935 (RZE77_01935) ssb 431910..432461 (+) 552 WP_319440458.1 single-stranded DNA-binding protein Machinery gene
  RZE77_RS01940 (RZE77_01940) - 432520..434499 (+) 1980 WP_319440459.1 sensor histidine kinase -
  RZE77_RS01945 (RZE77_01945) - 434512..434952 (-) 441 WP_319440460.1 GFA family protein -
  RZE77_RS01950 (RZE77_01950) - 434971..435684 (-) 714 WP_021005153.1 YebC/PmpR family DNA-binding transcriptional regulator -
  RZE77_RS01955 (RZE77_01955) - 436039..436419 (+) 381 WP_018903959.1 hypothetical protein -
  RZE77_RS01960 (RZE77_01960) - 436476..436769 (+) 294 WP_319440461.1 hypothetical protein -
  RZE77_RS01965 (RZE77_01965) - 436781..437380 (+) 600 WP_012745548.1 DUF6891 domain-containing protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19310.23 Da        Isoelectric Point: 5.9554

>NTDB_id=903260 RZE77_RS01935 WP_319440458.1 431910..432461(+) (ssb) [Variovorax paradoxus strain SPNA7]
MASVNKVIVVGNLGRDPEMRTFPSGDQVANVTVATTDRWKDKQSGEMREATEWHRIVFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDKDGIEKYTTEIRADQMQMLGSRQGQGGPSGGPEDDGGYSQGGGGGGYSQGGGGGGGGYAPRAPAAAPRAPA
PAPRQAPAKSSSGFDDMDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=903260 RZE77_RS01935 WP_319440458.1 431910..432461(+) (ssb) [Variovorax paradoxus strain SPNA7]
ATGGCATCGGTCAACAAAGTCATCGTCGTCGGCAATCTGGGGCGCGACCCCGAAATGCGTACCTTCCCGAGCGGCGACCA
GGTCGCGAACGTCACCGTGGCCACCACCGATCGCTGGAAAGACAAGCAAAGCGGCGAAATGCGCGAGGCCACCGAGTGGC
ACCGCATCGTCTTCAACGGCCGACTGGCCGAAATCGCCGGCCAGTACCTGCGCAAGGGCTCGCAGGTGTACGTCGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACAAGGACGGCATCGAGAAATACACCACCGAAATCCGCGCCGACCAGATGCAGAT
GCTGGGCAGCCGCCAGGGCCAGGGCGGCCCCTCGGGCGGTCCCGAGGACGACGGCGGCTATTCGCAGGGCGGCGGTGGCG
GCGGCTACTCGCAAGGCGGTGGTGGCGGTGGCGGCGGCTATGCCCCCCGCGCACCGGCCGCGGCACCGCGCGCTCCGGCG
CCGGCACCGCGCCAGGCTCCGGCCAAGTCGTCGTCGGGCTTCGACGACATGGACGACGACATTCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.88

100

0.552
  ssb Vibrio cholerae strain A1552

47.423

100

0.503
  ssb Neisseria gonorrhoeae MS11

46.703

99.454

0.464
  ssb Neisseria meningitidis MC58

42.408

100

0.443