Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RZE79_RS02125 Genome accession   NZ_CP138496
Coordinates   463817..464380 (+) Length   187 a.a.
NCBI ID   WP_319358833.1    Uniprot ID   -
Organism   Variovorax sp. EBFNA2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 458817..469380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZE79_RS02115 (RZE79_02115) uvrA 459170..462226 (-) 3057 WP_373696527.1 excinuclease ABC subunit UvrA -
  RZE79_RS02120 (RZE79_02120) - 462281..463660 (-) 1380 WP_319361067.1 chloride channel protein -
  RZE79_RS02125 (RZE79_02125) ssb 463817..464380 (+) 564 WP_319358833.1 single-stranded DNA-binding protein Machinery gene
  RZE79_RS02130 (RZE79_02130) - 464751..465131 (+) 381 WP_319358834.1 helicase SNF2 -
  RZE79_RS02135 (RZE79_02135) - 465430..466035 (+) 606 WP_319358835.1 hypothetical protein -
  RZE79_RS02140 (RZE79_02140) - 466032..467825 (+) 1794 WP_319358836.1 VanW family protein -
  RZE79_RS02145 (RZE79_02145) - 467842..468447 (+) 606 WP_319358837.1 hypothetical protein -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 19568.46 Da        Isoelectric Point: 5.9505

>NTDB_id=903154 RZE79_RS02125 WP_319358833.1 463817..464380(+) (ssb) [Variovorax sp. EBFNA2]
MASVNKVIVVGNLGRDPEMRTFPSGDQVANVTVATTDRWKDKQSGEMREATEWHRIVFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDKDGIEKYTTEIRADQMQMLGSRQGQGGPSGPSDDDGGYSQGGGGGGYSQGGGGGGGGGGGYAPRAPAAAAP
RAPAPAPRQAPAKSSSGFDDMDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=903154 RZE79_RS02125 WP_319358833.1 463817..464380(+) (ssb) [Variovorax sp. EBFNA2]
ATGGCATCGGTCAATAAAGTCATCGTCGTCGGCAACCTGGGGCGCGACCCCGAAATGCGGACCTTCCCGAGCGGCGATCA
GGTCGCAAACGTCACCGTGGCCACCACCGATCGCTGGAAAGACAAGCAAAGCGGCGAGATGCGCGAAGCCACCGAATGGC
ACCGCATCGTGTTCAACGGCCGCCTGGCCGAAATCGCCGGCCAGTACCTGCGCAAGGGCTCGCAGGTGTACGTCGAAGGC
TCGCTGCGCACGCGCAAGTGGACCGACAAGGACGGCATCGAAAAGTACACCACCGAAATCCGCGCCGACCAGATGCAGAT
GCTGGGCAGCCGCCAGGGCCAGGGCGGCCCGTCGGGTCCGAGCGACGACGACGGCGGCTACTCGCAAGGCGGTGGCGGCG
GCGGTTATTCGCAAGGTGGCGGCGGTGGTGGTGGTGGCGGCGGCGGTTACGCCCCGCGTGCCCCCGCAGCAGCCGCACCG
CGCGCACCGGCACCGGCGCCGCGCCAGGCGCCGGCCAAGTCGTCGTCGGGCTTCGACGACATGGACGACGACATTCCGTT
CTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.761

100

0.535
  ssb Vibrio cholerae strain A1552

46.907

100

0.487
  ssb Neisseria gonorrhoeae MS11

44.681

100

0.449
  ssb Neisseria meningitidis MC58

43.684

100

0.444