Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   SGJ46_RS13715 Genome accession   NZ_CP138461
Coordinates   2849043..2850185 (+) Length   380 a.a.
NCBI ID   WP_075168149.1    Uniprot ID   -
Organism   Acinetobacter indicus strain CZH-5     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 2844043..2855185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGJ46_RS13695 - 2844605..2846638 (-) 2034 WP_329415439.1 TonB-dependent copper receptor -
  SGJ46_RS13700 - 2846712..2847134 (-) 423 WP_104472874.1 DUF2946 family protein -
  SGJ46_RS13705 def 2847225..2847749 (-) 525 WP_177155238.1 peptide deformylase -
  SGJ46_RS13710 tsaP 2847869..2849026 (+) 1158 WP_016658990.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  SGJ46_RS13715 dprA 2849043..2850185 (+) 1143 WP_075168149.1 DNA-processing protein DprA Machinery gene
  SGJ46_RS13720 - 2850230..2850796 (+) 567 WP_005181449.1 L-threonylcarbamoyladenylate synthase -
  SGJ46_RS13725 - 2851177..2852088 (-) 912 WP_005181447.1 DMT family transporter -
  SGJ46_RS13730 - 2852417..2852959 (+) 543 WP_005181445.1 glutathione peroxidase -
  SGJ46_RS13735 - 2853142..2853750 (+) 609 WP_329415455.1 hypothetical protein -
  SGJ46_RS13740 - 2853870..2854868 (+) 999 WP_177155236.1 pirin family protein -

Sequence


Protein


Download         Length: 380 a.a.        Molecular weight: 42108.92 Da        Isoelectric Point: 6.8775

>NTDB_id=902946 SGJ46_RS13715 WP_075168149.1 2849043..2850185(+) (dprA) [Acinetobacter indicus strain CZH-5]
MLNTISPGHLATIRLWYLVQHSLPSFYKLIRHFGSAAAATEAGNLQRWAELGLHQNHLQRARDFHQAQAQADFQHLLQRV
QQHTDFILIPEDVGYPTQLLPYTDKPPILFGQGQAQPLLQPQVAIVGSRKASPHGRQVAYDFAYYLSEKGFFINSGLAQG
IDEAAHQGGLKHQRTIAVMGTGLDLTYPATHQGLRDQILQQHGTIISEFLPQTKPLQQHFPRRNRIVSGLSLGVIVAEAT
LDSGSLITAKLAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQVIEDLALPTQWLSQQQATLSATASAAAHPT
LPEHLLALYSQLDWVGKNMDQLASELQQETAHLTAQLMELELLGMAMQQSGLYLRCRPSQ

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=902946 SGJ46_RS13715 WP_075168149.1 2849043..2850185(+) (dprA) [Acinetobacter indicus strain CZH-5]
ATGCTGAATACGATATCACCCGGTCATCTCGCAACGATTCGCCTGTGGTATCTGGTTCAGCATTCACTCCCCAGCTTTTA
TAAATTAATCCGGCACTTCGGTTCGGCCGCTGCGGCCACCGAAGCCGGCAACCTGCAGCGCTGGGCAGAACTGGGACTGC
ATCAGAACCATCTGCAACGCGCACGGGATTTTCATCAAGCACAGGCACAAGCCGACTTCCAGCACTTGCTGCAGCGCGTC
CAGCAACATACCGATTTTATTCTTATTCCCGAAGATGTCGGTTACCCCACCCAACTGCTGCCCTATACCGACAAGCCACC
AATTTTATTTGGCCAAGGACAGGCACAACCTTTACTTCAGCCGCAAGTGGCAATTGTCGGCAGTCGCAAAGCCAGTCCGC
ATGGCCGGCAGGTGGCTTATGACTTTGCCTATTATTTAAGTGAAAAAGGCTTTTTTATTAACAGTGGCCTGGCGCAAGGC
ATTGATGAAGCAGCCCATCAGGGTGGCTTGAAACATCAACGTACCATTGCCGTGATGGGTACTGGTCTCGACCTCACCTA
CCCGGCCACACACCAGGGCCTGCGTGACCAGATTCTGCAACAGCATGGCACTATTATCAGTGAGTTCCTGCCCCAGACTA
AACCGCTACAGCAGCATTTTCCACGGCGTAACCGCATTGTCAGTGGACTTAGCCTGGGAGTGATTGTAGCCGAAGCCACG
CTGGACAGCGGCTCGCTGATTACCGCCAAACTGGCGGCCGAGCAAGGTAAAACCGTGTTTGCCATTCCGGGACATATTTA
CAGTGAATTTCATCAGGGCTGCCATCAACTGATTCGGGAAGGCGCGATTCTGGTTGATCATCCGGAACAGGTCATTGAAG
ATCTGGCCTTGCCAACCCAATGGCTGAGCCAGCAGCAGGCGACCTTATCCGCTACAGCATCTGCAGCTGCCCACCCGACC
TTACCCGAACATCTGTTGGCCCTATACAGCCAGCTGGACTGGGTTGGTAAAAACATGGACCAGCTGGCCAGCGAACTGCA
ACAGGAAACCGCCCATTTAACCGCGCAGTTAATGGAACTGGAGCTGCTCGGGATGGCAATGCAGCAATCGGGGCTATATC
TGCGTTGTCGTCCATCGCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

69.761

99.211

0.692

  dprA Acinetobacter baumannii D1279779

69.761

99.211

0.692

  dprA Acinetobacter baylyi ADP1

64.474

100

0.645

  dprA Vibrio cholerae strain A1552

43.155

88.421

0.382