Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | ABI424_RS07685 | Genome accession | NZ_CP157211 |
| Coordinates | 1645947..1647167 (+) | Length | 406 a.a. |
| NCBI ID | WP_012341581.1 | Uniprot ID | A0A9Q7E4C6 |
| Organism | Histophilus somni strain 23-038383_S91 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1640947..1652167
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABI424_RS07650 (ABI424_001532) | - | 1642454..1642696 (+) | 243 | WP_011608610.1 | hypothetical protein | - |
| ABI424_RS07655 (ABI424_001533) | - | 1642735..1643469 (+) | 735 | WP_075294059.1 | 4'-phosphopantetheinyl transferase superfamily protein | - |
| ABI424_RS07665 (ABI424_001535) | gltX | 1643808..1645250 (-) | 1443 | WP_075294058.1 | glutamate--tRNA ligase | - |
| ABI424_RS07685 (ABI424_001539) | pilC | 1645947..1647167 (+) | 1221 | WP_012341581.1 | type II secretion system F family protein | Machinery gene |
| ABI424_RS07690 (ABI424_001540) | pilD | 1647164..1647871 (+) | 708 | WP_011608614.1 | A24 family peptidase | Machinery gene |
| ABI424_RS07695 (ABI424_001541) | coaE | 1647891..1648538 (+) | 648 | WP_012341582.1 | dephospho-CoA kinase | - |
| ABI424_RS07700 (ABI424_001542) | yacG | 1648535..1648729 (+) | 195 | WP_011608616.1 | DNA gyrase inhibitor YacG | - |
| ABI424_RS07705 (ABI424_001543) | - | 1649133..1650509 (+) | 1377 | WP_012341585.1 | sodium:alanine symporter family protein | - |
| ABI424_RS07710 (ABI424_001544) | raiA | 1650745..1651062 (+) | 318 | WP_012341586.1 | ribosome-associated translation inhibitor RaiA | - |
| ABI424_RS07715 (ABI424_001545) | hpt | 1651266..1651805 (+) | 540 | WP_011608620.1 | hypoxanthine phosphoribosyltransferase | - |
Sequence
Protein
Download Length: 406 a.a. Molecular weight: 46702.12 Da Isoelectric Point: 9.7933
>NTDB_id=902928 ABI424_RS07685 WP_012341581.1 1645947..1647167(+) (pilC) [Histophilus somni strain 23-038383_S91]
MQNLKLFSWKATNFLQQKQAGMLVIENVQEAKRYLLQQGLNNIYLQRHWQLNKKPKKIEFCDLLTQLAMLLQSSIPLKDS
LQILLRNCVNISLNQWVRYILKNLEGGLSFSQSVAQSGLYFSYQERQLISVGEMTGDLASVCQQIAEHRQQALALQRKIQ
KILLYPMIVLSISVILTALLLIFIVPQFAEMYGSNQSELPFFTQLLLNISSFLQQYFFHMIAVSILFFYLIKLRLHNSYS
FQLKKDWFLSHVPLLNKIIRLNRTISFCRSLGLMLNSGIPLQQSLYSFLPQNSINIQKKIEGDLTLINEVKLTLRGIEQG
YKFSQSVSSNLFSIQTQQMLQVGEKSGNLGLILQHIAENQQQQLDHQIDLLSQMLEPFMMVIIGGLIGLIMLGMYLPIFN
MGSLIQ
MQNLKLFSWKATNFLQQKQAGMLVIENVQEAKRYLLQQGLNNIYLQRHWQLNKKPKKIEFCDLLTQLAMLLQSSIPLKDS
LQILLRNCVNISLNQWVRYILKNLEGGLSFSQSVAQSGLYFSYQERQLISVGEMTGDLASVCQQIAEHRQQALALQRKIQ
KILLYPMIVLSISVILTALLLIFIVPQFAEMYGSNQSELPFFTQLLLNISSFLQQYFFHMIAVSILFFYLIKLRLHNSYS
FQLKKDWFLSHVPLLNKIIRLNRTISFCRSLGLMLNSGIPLQQSLYSFLPQNSINIQKKIEGDLTLINEVKLTLRGIEQG
YKFSQSVSSNLFSIQTQQMLQVGEKSGNLGLILQHIAENQQQQLDHQIDLLSQMLEPFMMVIIGGLIGLIMLGMYLPIFN
MGSLIQ
Nucleotide
Download Length: 1221 bp
>NTDB_id=902928 ABI424_RS07685 WP_012341581.1 1645947..1647167(+) (pilC) [Histophilus somni strain 23-038383_S91]
ATGCAGAATTTGAAGCTATTTTCTTGGAAAGCCACTAATTTTTTACAGCAAAAACAAGCTGGAATGCTTGTTATCGAAAA
TGTACAAGAGGCCAAACGCTATTTATTACAACAAGGGCTAAACAATATATATTTACAGCGTCATTGGCAACTGAATAAAA
AGCCTAAAAAAATAGAATTTTGTGATCTATTAACTCAATTAGCAATGTTATTACAATCCTCAATTCCTTTAAAAGATAGC
TTACAAATTTTATTGAGAAATTGTGTTAATATTTCTTTAAATCAATGGGTTAGATATATTTTAAAAAATCTTGAAGGAGG
ATTATCTTTTTCACAATCTGTGGCTCAATCAGGTCTATATTTTTCTTATCAAGAACGCCAACTCATTTCTGTTGGAGAAA
TGACGGGAGATTTAGCCTCTGTTTGCCAACAAATAGCAGAACATCGTCAGCAGGCATTAGCATTACAACGCAAAATTCAA
AAAATTTTACTCTATCCAATGATAGTCTTAAGTATTTCTGTCATTCTCACCGCACTTCTATTAATTTTTATCGTGCCACA
ATTTGCCGAAATGTACGGTTCTAATCAATCCGAGCTTCCTTTTTTTACGCAGCTATTGTTAAACATATCCTCTTTTTTAC
AACAGTATTTTTTTCATATGATAGCGGTATCTATTTTATTTTTTTATCTAATAAAATTACGTTTACACAATTCATATAGT
TTTCAACTCAAAAAAGATTGGTTTTTATCGCATGTGCCGTTGTTAAATAAAATTATTCGGCTTAATAGAACGATAAGTTT
TTGCCGTAGTTTAGGATTAATGCTCAACTCAGGCATTCCTTTACAACAAAGTCTATATTCTTTCCTTCCCCAAAACTCTA
TCAACATACAGAAAAAGATTGAGGGAGATCTCACGTTAATTAATGAAGTAAAGCTAACATTACGTGGTATCGAACAAGGA
TATAAATTCTCTCAGTCTGTAAGCAGTAATTTGTTTTCTATACAAACACAACAAATGCTACAAGTTGGTGAAAAGAGTGG
AAATCTAGGTTTAATTCTGCAACATATCGCAGAAAATCAGCAACAACAGTTAGATCATCAAATTGATTTACTTTCACAAA
TGTTAGAACCGTTTATGATGGTGATCATTGGCGGATTAATAGGCTTGATTATGTTAGGTATGTATTTACCAATCTTTAAT
ATGGGAAGTTTAATTCAATGA
ATGCAGAATTTGAAGCTATTTTCTTGGAAAGCCACTAATTTTTTACAGCAAAAACAAGCTGGAATGCTTGTTATCGAAAA
TGTACAAGAGGCCAAACGCTATTTATTACAACAAGGGCTAAACAATATATATTTACAGCGTCATTGGCAACTGAATAAAA
AGCCTAAAAAAATAGAATTTTGTGATCTATTAACTCAATTAGCAATGTTATTACAATCCTCAATTCCTTTAAAAGATAGC
TTACAAATTTTATTGAGAAATTGTGTTAATATTTCTTTAAATCAATGGGTTAGATATATTTTAAAAAATCTTGAAGGAGG
ATTATCTTTTTCACAATCTGTGGCTCAATCAGGTCTATATTTTTCTTATCAAGAACGCCAACTCATTTCTGTTGGAGAAA
TGACGGGAGATTTAGCCTCTGTTTGCCAACAAATAGCAGAACATCGTCAGCAGGCATTAGCATTACAACGCAAAATTCAA
AAAATTTTACTCTATCCAATGATAGTCTTAAGTATTTCTGTCATTCTCACCGCACTTCTATTAATTTTTATCGTGCCACA
ATTTGCCGAAATGTACGGTTCTAATCAATCCGAGCTTCCTTTTTTTACGCAGCTATTGTTAAACATATCCTCTTTTTTAC
AACAGTATTTTTTTCATATGATAGCGGTATCTATTTTATTTTTTTATCTAATAAAATTACGTTTACACAATTCATATAGT
TTTCAACTCAAAAAAGATTGGTTTTTATCGCATGTGCCGTTGTTAAATAAAATTATTCGGCTTAATAGAACGATAAGTTT
TTGCCGTAGTTTAGGATTAATGCTCAACTCAGGCATTCCTTTACAACAAAGTCTATATTCTTTCCTTCCCCAAAACTCTA
TCAACATACAGAAAAAGATTGAGGGAGATCTCACGTTAATTAATGAAGTAAAGCTAACATTACGTGGTATCGAACAAGGA
TATAAATTCTCTCAGTCTGTAAGCAGTAATTTGTTTTCTATACAAACACAACAAATGCTACAAGTTGGTGAAAAGAGTGG
AAATCTAGGTTTAATTCTGCAACATATCGCAGAAAATCAGCAACAACAGTTAGATCATCAAATTGATTTACTTTCACAAA
TGTTAGAACCGTTTATGATGGTGATCATTGGCGGATTAATAGGCTTGATTATGTTAGGTATGTATTTACCAATCTTTAAT
ATGGGAAGTTTAATTCAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Haemophilus influenzae Rd KW20 |
53.431 |
100 |
0.537 |
| pilC | Haemophilus influenzae 86-028NP |
53.102 |
99.261 |
0.527 |
| pilC | Glaesserella parasuis strain SC1401 |
39.901 |
100 |
0.399 |