Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ABI424_RS07690 Genome accession   NZ_CP157211
Coordinates   1647164..1647871 (+) Length   235 a.a.
NCBI ID   WP_011608614.1    Uniprot ID   -
Organism   Histophilus somni strain 23-038383_S91     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1642164..1652871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABI424_RS07650 (ABI424_001532) - 1642454..1642696 (+) 243 WP_011608610.1 hypothetical protein -
  ABI424_RS07655 (ABI424_001533) - 1642735..1643469 (+) 735 WP_075294059.1 4'-phosphopantetheinyl transferase superfamily protein -
  ABI424_RS07665 (ABI424_001535) gltX 1643808..1645250 (-) 1443 WP_075294058.1 glutamate--tRNA ligase -
  ABI424_RS07685 (ABI424_001539) pilC 1645947..1647167 (+) 1221 WP_012341581.1 type II secretion system F family protein Machinery gene
  ABI424_RS07690 (ABI424_001540) pilD 1647164..1647871 (+) 708 WP_011608614.1 A24 family peptidase Machinery gene
  ABI424_RS07695 (ABI424_001541) coaE 1647891..1648538 (+) 648 WP_012341582.1 dephospho-CoA kinase -
  ABI424_RS07700 (ABI424_001542) yacG 1648535..1648729 (+) 195 WP_011608616.1 DNA gyrase inhibitor YacG -
  ABI424_RS07705 (ABI424_001543) - 1649133..1650509 (+) 1377 WP_012341585.1 sodium:alanine symporter family protein -
  ABI424_RS07710 (ABI424_001544) raiA 1650745..1651062 (+) 318 WP_012341586.1 ribosome-associated translation inhibitor RaiA -
  ABI424_RS07715 (ABI424_001545) hpt 1651266..1651805 (+) 540 WP_011608620.1 hypoxanthine phosphoribosyltransferase -
  ABI424_RS07720 (ABI424_001546) sodA 1651933..1652562 (-) 630 WP_012341587.1 superoxide dismutase [Mn] -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 27007.51 Da        Isoelectric Point: 8.1958

>NTDB_id=902929 ABI424_RS07690 WP_011608614.1 1647164..1647871(+) (pilD) [Histophilus somni strain 23-038383_S91]
MIYLAYMLFGGLCGLWVYLYVRQFSAQINKQVYSTFCEIFPENAPHLMPMSILRRKKCGHFSMYFLCGGLWCNICLNFPQ
NIYVGLWLACCGYLIFCLVLVDWLYQLVSQTLCQALFILGLLGAYQGISPLTLEQSLIGSLSGFSVFYLIYIVAKLFYRY
EALGRGDYWLMLGLGSFISWTKLPLLIFLACLTGLIYVVFNARDKKTIFIPFAPFLCLSTIIVYLLNFLREDILP

Nucleotide


Download         Length: 708 bp        

>NTDB_id=902929 ABI424_RS07690 WP_011608614.1 1647164..1647871(+) (pilD) [Histophilus somni strain 23-038383_S91]
ATGATTTATCTGGCTTATATGTTGTTTGGTGGACTTTGTGGCTTATGGGTTTACCTTTATGTCAGGCAATTTTCTGCTCA
GATTAATAAACAAGTTTACTCGACTTTTTGCGAAATTTTCCCCGAAAATGCACCGCACTTGATGCCTATGTCTATCTTAC
GACGGAAAAAGTGCGGTCATTTTTCTATGTATTTTTTGTGTGGTGGCCTTTGGTGTAATATATGTTTAAATTTCCCACAA
AATATTTATGTTGGTTTATGGTTAGCATGTTGCGGTTATTTAATTTTTTGCCTTGTTTTAGTGGATTGGCTATACCAACT
CGTTTCACAAACCTTATGCCAAGCCCTATTTATTTTAGGGTTATTGGGTGCTTATCAAGGTATTAGCCCATTGACTTTGG
AGCAGTCTTTAATTGGTAGCTTATCAGGCTTTTCGGTTTTTTATCTTATTTACATTGTTGCAAAATTATTCTATCGTTAT
GAAGCTTTAGGACGTGGCGATTACTGGTTAATGTTAGGGTTAGGGAGCTTTATATCTTGGACAAAATTACCGTTGCTCAT
TTTTCTTGCCTGCCTCACAGGATTAATATATGTCGTTTTTAATGCAAGAGACAAAAAAACAATATTTATTCCTTTTGCCC
CATTCTTATGCCTCTCAACCATTATCGTATACTTGCTTAATTTTCTAAGGGAGGATATTCTTCCTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(94-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae 86-028NP

39.13

97.872

0.383
  pilD Haemophilus influenzae Rd KW20

36.957

97.872

0.362