Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   SGJ46_RS09405 Genome accession   NZ_CP138461
Coordinates   1939183..1939887 (+) Length   234 a.a.
NCBI ID   WP_005177031.1    Uniprot ID   A0A6C0Y3U4
Organism   Acinetobacter indicus strain CZH-5     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1934183..1944887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGJ46_RS09390 - 1934198..1935481 (-) 1284 WP_177155506.1 DUF945 family protein -
  SGJ46_RS09395 clpB 1935709..1938288 (-) 2580 WP_329414227.1 ATP-dependent chaperone ClpB -
  SGJ46_RS09400 - 1938613..1939035 (-) 423 WP_005177032.1 OsmC family protein -
  SGJ46_RS09405 crp 1939183..1939887 (+) 705 WP_005177031.1 cAMP-activated global transcriptional regulator CRP Regulator
  SGJ46_RS09410 - 1940058..1941107 (+) 1050 WP_177155504.1 NADP(H)-dependent aldo-keto reductase -
  SGJ46_RS09415 - 1941190..1941972 (-) 783 WP_005177027.1 M48 family metallopeptidase -
  SGJ46_RS09420 - 1942135..1942443 (-) 309 WP_005177024.1 hypothetical protein -
  SGJ46_RS09425 - 1942532..1943317 (-) 786 WP_329414238.1 M48 family metallopeptidase -
  SGJ46_RS09430 - 1943454..1944773 (-) 1320 WP_329414240.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26315.89 Da        Isoelectric Point: 4.6470

>NTDB_id=902929 SGJ46_RS09405 WP_005177031.1 1939183..1939887(+) (crp) [Acinetobacter indicus strain CZH-5]
MTSNFSQLSTDALSPGQLPDSVKALLKRAYINRYPKRTTIVDAGSESKSLYLILKGSVSIILREDDDREIVVAYLNPGDF
FGEMGLFEANPQRTAEVRTRDVCEIAEVTYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEQNDAADEQFDDE

Nucleotide


Download         Length: 705 bp        

>NTDB_id=902929 SGJ46_RS09405 WP_005177031.1 1939183..1939887(+) (crp) [Acinetobacter indicus strain CZH-5]
ATGACTTCAAACTTTTCACAATTAAGCACCGATGCCCTGTCTCCTGGTCAATTACCAGATTCAGTCAAGGCATTATTAAA
ACGTGCATATATCAACCGTTATCCGAAACGGACCACAATTGTTGATGCGGGGTCTGAATCAAAATCACTTTATTTGATTC
TGAAAGGATCTGTTTCCATCATTCTGCGTGAAGATGATGATCGCGAAATTGTTGTGGCGTATTTGAATCCGGGTGACTTC
TTTGGGGAAATGGGTCTATTCGAAGCAAATCCACAACGTACTGCAGAAGTACGCACACGTGACGTTTGTGAAATTGCCGA
AGTGACTTATGAAAACTTCCACGAGCTCAGCAAGCAATATCCAGATTTAAGCTATGCGGTATTTGCCCAACTGGTGCGCC
GTTTAAAAAATACCACGCGTAAAGTGACCGATCTGGCCTTCATTGATGTTTCAGGCCGTATTGCGCGTTGTCTGATTGAC
CTGTCTGCGCAGCCTGAAGCCATGATTTTGCCAAATGGCCGTCAAATCCGCATTACCCGTCAGGAAATTGGCCGCATTGT
TGGCTGTTCACGTGAAATGGTCGGCCGTGTTCTGAAAACCCTGGAAGAACAAGGCATGATCGAAACTGATGGTAAAGCCA
TTCTGATTTTTGATGCCTCTTTAGAGCAAAATGATGCAGCAGATGAACAGTTTGATGATGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6C0Y3U4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

91.026

100

0.91
  crp Vibrio cholerae strain A1552

46.829

87.607

0.41
  crp Haemophilus influenzae Rd KW20

47.179

83.333

0.393