Detailed information NTG0902549

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: SD196_RS24940
• Genome accession: NZ_CP138377
• Coordinates: 5445317..5446381 (-)
• Length: 354 a.a.
• NCBI ID: WP_207882126.1
• Uniprot ID: -
• Organism: Pseudomonas sp. W03
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5440317..5451381

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SD196_RS24915 (SD196_24865)	aroK	5440837..5441328 (-)	492	WP_416311778.1	shikimate kinase AroK	-
SD196_RS24920 (SD196_24870)	pilQ	5441364..5443502 (-)	2139	WP_343576639.1	type IV pilus secretin PilQ	Machinery gene
SD196_RS24925 (SD196_24875)	pilP	5443556..5444080 (-)	525	WP_275608988.1	type 4a pilus biogenesis lipoprotein PilP	-
SD196_RS24930 (SD196_24880)	pilO	5444077..5444727 (-)	651	WP_343576636.1	type 4a pilus biogenesis protein PilO	-
SD196_RS24935 (SD196_24885)	pilN	5444724..5445317 (-)	594	WP_275608990.1	type 4a pilus biogenesis protein PilN	-
SD196_RS24940 (SD196_24890)	pilM	5445317..5446381 (-)	1065	WP_207882126.1	pilus assembly protein PilM	Machinery gene
SD196_RS24945 (SD196_24895)	-	5446567..5449005 (+)	2439	WP_343576632.1	penicillin-binding protein 1A	-
SD196_RS24950 (SD196_24900)	-	5449185..5449652 (+)	468	WP_416310795.1	hypothetical protein	-
SD196_RS24955 (SD196_24905)	-	5449646..5450140 (-)	495	WP_275608993.1	YgjP-like metallopeptidase domain-containing protein	-
SD196_RS24960 (SD196_24910)	-	5450191..5450961 (-)	771	WP_275608994.1	class I SAM-dependent methyltransferase	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 37761.04 Da
• Isoelectric Point: 4.4526

>NTDB_id=902549 SD196_RS24940 WP_207882126.1 5445317..5446381(-) (pilM) [Pseudomonas sp. W03]
MLGLFNKKANTLLGIDISSTSVKLLELSRSGGRYKVEAYAVEPLPPNAVVEKNIAELEGVGQALSRVVAKARTGVKTAAV
AVAGSAVITKTIEMDGGLSEDELENQLKIEADQYIPYPLEEVAIDFEVQGASARNAERVDVLLAACRKENVEVREAALAL
SGLTAKVVDVEAYALERAFSLLGDQLGGNADELTVAVVDIGATMTTLSVLHHGRTIYTREQLFGGRQLTEEIQRRYGLSV
EEAGLAKKQGGLPDDYDSEVLQPFKDAVVQQVSRSLQFFFAAGQFNDVDYILLAGGTASIPDLDRLIQQKIGTPTLVANP
FTDMVLSGKVNAGALASDAPALMIACGLAMRSFD

Nucleotide

• Length: 1065 bp

>NTDB_id=902549 SD196_RS24940 WP_207882126.1 5445317..5446381(-) (pilM) [Pseudomonas sp. W03]
GTGCTAGGGCTATTCAATAAGAAAGCGAACACGCTGCTGGGGATAGACATCAGTTCGACTTCGGTCAAACTCCTCGAACT
GAGCCGCTCGGGAGGCCGCTACAAGGTAGAGGCCTACGCCGTGGAGCCGCTCCCTCCCAATGCAGTGGTAGAAAAGAACA
TCGCTGAACTGGAGGGTGTCGGCCAGGCGTTGTCACGTGTGGTCGCCAAGGCGCGCACCGGCGTGAAGACGGCTGCGGTC
GCGGTCGCTGGCTCGGCGGTCATCACCAAGACCATCGAGATGGACGGCGGTCTCTCGGAAGACGAGCTGGAGAACCAGCT
CAAGATCGAGGCCGACCAGTACATTCCCTATCCCCTCGAAGAAGTCGCGATCGACTTTGAAGTCCAGGGCGCATCCGCAC
GGAACGCCGAGCGCGTTGACGTACTCCTCGCCGCCTGTCGGAAGGAAAACGTTGAAGTGCGTGAGGCAGCTCTGGCGCTG
TCGGGGCTGACCGCCAAGGTCGTCGACGTCGAGGCCTACGCGCTGGAGCGAGCGTTCAGTCTGCTCGGCGATCAGTTGGG
CGGCAATGCCGACGAGCTCACAGTTGCGGTGGTCGACATCGGCGCCACCATGACCACGCTGAGCGTGCTGCACCACGGTC
GCACCATCTATACGCGCGAACAGCTGTTCGGCGGGCGCCAGCTCACCGAGGAGATTCAGCGTCGCTATGGCCTGTCGGTG
GAAGAAGCTGGGCTTGCCAAGAAGCAGGGCGGTCTTCCGGATGACTATGACAGCGAAGTTTTGCAACCGTTCAAGGATGC
GGTCGTTCAACAAGTCTCCCGTTCGCTGCAGTTCTTCTTCGCCGCCGGTCAGTTCAACGACGTGGACTACATCCTGCTGG
CAGGCGGAACGGCTTCCATTCCGGACCTGGACAGATTGATCCAGCAGAAGATCGGTACTCCGACACTCGTGGCCAACCCC
TTTACCGACATGGTGCTGAGCGGGAAGGTCAATGCGGGGGCGCTGGCCAGTGACGCGCCGGCGTTGATGATTGCCTGCGG
TCTGGCGATGAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (14-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Acinetobacter baumannii D1279779	57.062	100	0.571
comM	Acinetobacter nosocomialis M2	57.062	100	0.571
comM	Acinetobacter baylyi ADP1	53.107	100	0.531
pilM	Legionella pneumophila strain ERS1305867	46.045	100	0.46