Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SE336_RS16565 Genome accession   NZ_CP138376
Coordinates   3867052..3868110 (-) Length   352 a.a.
NCBI ID   WP_039423791.1    Uniprot ID   -
Organism   Xanthomonas arboricola strain AHX463     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3862052..3873110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE336_RS16545 (SE336_16550) - 3863187..3865067 (-) 1881 WP_228607832.1 type IV pilus secretin PilQ -
  SE336_RS16550 (SE336_16555) - 3865087..3865620 (-) 534 WP_016903584.1 pilus assembly protein PilP -
  SE336_RS16555 (SE336_16560) - 3865617..3866282 (-) 666 WP_016903585.1 type 4a pilus biogenesis protein PilO -
  SE336_RS16560 (SE336_16565) - 3866279..3867052 (-) 774 WP_411862098.1 PilN domain-containing protein -
  SE336_RS16565 (SE336_16570) comM 3867052..3868110 (-) 1059 WP_039423791.1 pilus assembly protein PilM Machinery gene
  SE336_RS16570 (SE336_16575) - 3868229..3870742 (+) 2514 WP_326519964.1 penicillin-binding protein 1A -
  SE336_RS16575 (SE336_16580) - 3870958..3871608 (+) 651 WP_102585199.1 hypothetical protein -
  SE336_RS16580 (SE336_16585) - 3871709..3872998 (-) 1290 WP_024938127.1 citrate synthase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37622.21 Da        Isoelectric Point: 4.3924

>NTDB_id=902517 SE336_RS16565 WP_039423791.1 3867052..3868110(-) (comM) [Xanthomonas arboricola strain AHX463]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=902517 SE336_RS16565 WP_039423791.1 3867052..3868110(-) (comM) [Xanthomonas arboricola strain AHX463]
GTGGGGCTTCTACCCAAGAGTCAATCGCCACTGATTGGTGTCGATATCAGTTCCACTGCGGTCAAGCTCTTGCAGCTGTC
GCGCAGCGGGAACCGTTTCCGCGTGGAGCATTACGCGGTGGAACCGTTGCCGCCGAATGCGGTCGTGGAAAAGAACATCG
TCGAAGTCGAGGCGGTTGGCGAAGCGATTCGTCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAATGCCGCGGCCGCG
GTGGCCGGGTCGGCGGTGATCACCAAGCTGATTCCGATGCCGGCCGATCTGGACGACAGCGATCTGGAAGCCCAGGTCGA
ACTGGAAGCCACCAATTACATCCCGTACCCGATCGAGGAAGTCAATCTCGACTTCGAGGTGCTCGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCGGCCTCGCGTTCGGAGAATGTGGAACTGCGCCAGTCCGCGCTGGAACTCGGT
GGCCTGACCGCCAAGGTCATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTTTGCCCTGGTCGCCAGCGAGTTGCCGGT
GGCCGCCGATGCGGTGGTTGCGCTGGTGGACATCGGCGCGACCATGACCACGCTGAGCGTGCTGCGCTCCGGTCGCAGCC
TGTATAGCCGCGAGCAGGTCTTCGGCGGCAAACAGCTCACCGACGAGGTGATGCGCCGTTACGGGTTGACCTACGAGGAG
GCCGGTCTGGCCAAGCGTCAGGGCGGCTTGCCGGAGAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAGGAGGCGACGGT
GCAGCAGATCAGCCGTTTGCTGCAGTTCTTCTACGCGGGCAGCGAATTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GCTGCGCTGCGCTGTCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTCGGCGTGACCACCGTGGTCGCCAACCCGCTCGCG
CAGATGACGTTGGGCCCGAAGGTCCAGGCGCATGCGCTGGCGCTGGATGCACCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

51.282

99.716

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472