Detailed information NTG0902498

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: SE337_RS25950
• Genome accession: NZ_CP138374
• Coordinates: 5587506..5588570 (-)
• Length: 354 a.a.
• NCBI ID: WP_054077043.1
• Uniprot ID: -
• Organism: Pseudomonas amygdali pv. sesami strain DFR141
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5582506..5593570

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SE337_RS25925 (SE337_25780)	aroK	5583087..5583605 (-)	519	WP_002551657.1	shikimate kinase AroK	-
SE337_RS25930 (SE337_25785)	pilQ	5583610..5585715 (-)	2106	WP_054077045.1	type IV pilus secretin PilQ	Machinery gene
SE337_RS25935 (SE337_25790)	pilP	5585763..5586290 (-)	528	WP_002551655.1	type 4a pilus biogenesis lipoprotein PilP	-
SE337_RS25940 (SE337_25795)	pilO	5586287..5586910 (-)	624	WP_054077044.1	type 4a pilus biogenesis protein PilO	-
SE337_RS25945 (SE337_25800)	-	5586907..5587506 (-)	600	WP_004654254.1	PilN domain-containing protein	-
SE337_RS25950 (SE337_25805)	pilM	5587506..5588570 (-)	1065	WP_054077043.1	pilus assembly protein PilM	Machinery gene
SE337_RS25955 (SE337_25810)	-	5588780..5591221 (+)	2442	WP_371911680.1	penicillin-binding protein 1A	-
SE337_RS25960 (SE337_25815)	-	5591957..5593225 (-)	1269	WP_002551650.1	malic enzyme-like NAD(P)-binding protein	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 38064.54 Da
• Isoelectric Point: 4.7008

>NTDB_id=902498 SE337_RS25950 WP_054077043.1 5587506..5588570(-) (pilM) [Pseudomonas amygdali pv. sesami strain DFR141]
MFELFSKKANTLLGIDISSTSVKLLELSRSGTRYKVESYAVEPLPANAVVEKNIAELEGVGQALSRVLAKAKTSVKIVAV
AVAGSAVITKTIEMDAGLSDDDMENQLKLEADQYIPYPLEEVAIDFEVQGYSVRNPERVEVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFGLLAAQLGNGHDELTVAVVDVGATMTTLSVLHHGRIIYTREQLFGGRQLTDEIQRRYGLSM
EEAGLAKKQGGLPDDYVSEVLDPFKDALVQQVSRSLQFFFAAGQYNSVDHIMLAGGTASISGLEHLIQRRIGTPTMVANP
FADMALSSKVNAGALASDAPALMIACGLALRSFD

Nucleotide

• Length: 1065 bp

>NTDB_id=902498 SE337_RS25950 WP_054077043.1 5587506..5588570(-) (pilM) [Pseudomonas amygdali pv. sesami strain DFR141]
GTGTTCGAACTCTTCAGTAAGAAGGCCAACACCCTTCTAGGGATCGATATTAGCTCCACCTCGGTAAAACTCCTGGAATT
GAGTCGTTCCGGCACTCGTTACAAGGTCGAGTCTTACGCAGTCGAGCCGTTGCCGGCCAACGCTGTCGTCGAAAAGAATA
TTGCCGAGCTCGAAGGGGTTGGCCAGGCGCTGTCTCGCGTGCTCGCCAAGGCCAAGACCAGCGTCAAGATCGTGGCGGTC
GCCGTAGCCGGTTCCGCCGTGATCACCAAGACGATTGAAATGGATGCCGGTCTTTCCGACGACGACATGGAAAACCAGCT
CAAGCTTGAGGCTGACCAGTACATCCCTTATCCGCTGGAAGAAGTCGCCATCGATTTCGAAGTGCAGGGCTACTCGGTGC
GCAATCCCGAACGCGTCGAAGTATTGCTGGCTGCCTGCCGCAAAGAGAACGTCGAAGTGCGTGAGGCGGCGCTGGCTCTG
GCCGGGCTGACCGCGCGCGTGGTGGACGTCGAGGCCTATGCCCTGGAGCGCTCGTTCGGCCTGCTGGCTGCGCAACTGGG
TAACGGTCATGACGAGCTTACCGTGGCGGTGGTCGATGTCGGTGCCACCATGACCACCCTCAGCGTGCTGCATCATGGCC
GGATCATCTATACCCGCGAGCAACTGTTTGGTGGCCGCCAGCTGACTGACGAAATCCAGCGCCGCTATGGGCTTTCCATG
GAGGAGGCCGGGCTTGCCAAGAAGCAGGGCGGGTTGCCCGACGACTATGTCAGCGAGGTGCTGGACCCCTTCAAGGATGC
GTTGGTGCAGCAGGTCTCCCGTTCTTTGCAGTTCTTCTTTGCGGCCGGTCAATACAACTCCGTGGATCACATCATGCTGG
CAGGCGGCACGGCTTCGATTTCAGGGCTGGAGCATTTGATTCAACGACGCATTGGCACCCCGACGATGGTCGCTAACCCG
TTTGCCGACATGGCCCTGAGCTCCAAGGTCAATGCCGGGGCGCTGGCCAGTGACGCTCCCGCGTTGATGATCGCGTGCGG
TCTGGCGTTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (14-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Acinetobacter baumannii D1279779	55.932	100	0.559
comM	Acinetobacter nosocomialis M2	55.932	100	0.559
comM	Acinetobacter baylyi ADP1	53.39	100	0.534
pilM	Legionella pneumophila strain ERS1305867	46.479	100	0.466