Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   SE337_RS03630 Genome accession   NZ_CP138374
Coordinates   657994..659331 (-) Length   445 a.a.
NCBI ID   WP_054076531.1    Uniprot ID   -
Organism   Pseudomonas amygdali pv. sesami strain DFR141     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 652994..664331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE337_RS03610 (SE337_03595) - 655138..655548 (+) 411 WP_054076527.1 type IV pilin protein -
  SE337_RS03615 (SE337_03600) thiO 655576..656688 (+) 1113 WP_054076528.1 glycine oxidase ThiO -
  SE337_RS03620 (SE337_03605) - 656691..657131 (-) 441 Protein_602 efflux RND transporter permease subunit -
  SE337_RS03625 (SE337_03610) - 657125..657325 (-) 201 Protein_603 TetR/AcrR family transcriptional regulator -
  SE337_RS03630 (SE337_03615) pilR 657994..659331 (-) 1338 WP_054076531.1 sigma-54-dependent transcriptional regulator Regulator
  SE337_RS03635 (SE337_03620) pilS 659334..660926 (-) 1593 WP_054076532.1 sensor histidine kinase Regulator
  SE337_RS03640 (SE337_03625) - 660916..661155 (-) 240 WP_002551997.1 PP0621 family protein -
  SE337_RS03645 (SE337_03630) - 661285..662307 (-) 1023 WP_054076533.1 outer membrane protein assembly factor BamD -
  SE337_RS03650 (SE337_03635) rluD 662457..663419 (+) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  SE337_RS03655 (SE337_03640) pgeF 663416..664144 (+) 729 WP_054076534.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49839.93 Da        Isoelectric Point: 6.6378

>NTDB_id=902476 SE337_RS03630 WP_054076531.1 657994..659331(-) (pilR) [Pseudomonas amygdali pv. sesami strain DFR141]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRCARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAINALKAGAFDFVTKPVDLGRLRELVNSALSLPCAQPARSIDSRLLGDSLAMRTLRNQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSIGSQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPSLRERREDIDQLAASV
LRRLAGNGTHPVARLNAQALDTLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLAESASPQEPNSPSLADIDNLED
YLESIERKLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=902476 SE337_RS03630 WP_054076531.1 657994..659331(-) (pilR) [Pseudomonas amygdali pv. sesami strain DFR141]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGATGACGAGCCGGATATCCGCGAACTGCTGGAGATCACTCTGGGGCGCAT
GAAACTCGACACCCGATGCGCCCGCAATGTTGCCGAGGCCCACGACTGGCTGGCCCGCGAGCCGTTCGATATGTGCCTGA
CCGACATGCGTCTGCCCGACGGCAACGGCCTTGAGCTGGTGCAGCATATTCAGCACGGCTACCCCCATGTGCCAGTGGCG
ATGATCACTGCCCACGGCAACCTGGACACCGCGATTAATGCGCTCAAGGCCGGGGCTTTCGATTTTGTGACCAAGCCGGT
TGACCTCGGCAGGCTGCGCGAACTGGTCAATAGTGCGCTGAGCCTGCCTTGCGCCCAGCCAGCCCGCAGCATCGACAGCC
GCCTGCTGGGCGACTCGCTGGCGATGCGTACCTTGCGCAACCAGATCGGCAAGCTGGCCCGCAGCCAGGCGCCGATCTAC
ATCAGTGGCGAATCGGGCAGTGGCAAGGAGCTTGTAGCGCGGCTGATCCACGAGCAGGGTCCGCGCATCGACAAACCGTT
CATACCGGTGAATTGCGGGGCCATTCCTTCCGAGCTGATGGAAAGCGAATTCTTTGGCCATCGCAAGGGCAGTTTCAGCG
GTGCCCACGAAGACAAGCCCGGTCTGTTTCAGGCGGCACATACCGGGACGCTGTTTCTCGACGAGGTGGCCGACCTACCG
CTGGCCATGCAGGTAAAGCTGTTGCGAGCCATCCAGGAAAAATCAATCCGCAGTATAGGCAGCCAGCAAGAGCAGATTGT
GGACGTACGCATTCTGTGCGCAACGCACAAGAACCTGAACGCAGAGGTTGCGGCAGGTCGCTTCCGCCAGGATCTGTATT
ACCGGTTGAACGTGATCGAAGTGCGCGTCCCCTCATTGCGCGAGCGGCGCGAGGACATCGATCAACTGGCAGCCAGTGTT
CTCCGAAGACTTGCCGGCAATGGTACACACCCCGTGGCGCGCCTGAATGCACAGGCGCTCGACACGCTGAAGAGCTACCG
ATTCCCCGGCAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCCTACACGCTCTGTGAAAACGATGAAATCCATGCCA
GCGACCTGCGCCTGGCAGAGTCCGCCAGCCCCCAGGAGCCCAACAGCCCTAGCCTGGCCGACATCGACAACCTTGAAGAT
TACCTGGAGAGCATCGAGCGCAAGCTGATTCTGCAGGCCCTGGAAGAAACCCGCTGGAACCGTACCGCAGCGGCAGAAAG
GCTCAGCTTATCCTTCAGATCGCTGCGTTACCGGCTGAAGAAACTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-116)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

77.252

99.775

0.771
  pilR Acinetobacter baumannii strain A118

48.38

100

0.503
  luxO Vibrio cholerae strain A1552

36.937

99.775

0.369