Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   SE337_RS03635 Genome accession   NZ_CP138374
Coordinates   659334..660926 (-) Length   530 a.a.
NCBI ID   WP_054076532.1    Uniprot ID   -
Organism   Pseudomonas amygdali pv. sesami strain DFR141     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 654334..665926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE337_RS03610 (SE337_03595) - 655138..655548 (+) 411 WP_054076527.1 type IV pilin protein -
  SE337_RS03615 (SE337_03600) thiO 655576..656688 (+) 1113 WP_054076528.1 glycine oxidase ThiO -
  SE337_RS03620 (SE337_03605) - 656691..657131 (-) 441 Protein_602 efflux RND transporter permease subunit -
  SE337_RS03625 (SE337_03610) - 657125..657325 (-) 201 Protein_603 TetR/AcrR family transcriptional regulator -
  SE337_RS03630 (SE337_03615) pilR 657994..659331 (-) 1338 WP_054076531.1 sigma-54-dependent transcriptional regulator Regulator
  SE337_RS03635 (SE337_03620) pilS 659334..660926 (-) 1593 WP_054076532.1 sensor histidine kinase Regulator
  SE337_RS03640 (SE337_03625) - 660916..661155 (-) 240 WP_002551997.1 PP0621 family protein -
  SE337_RS03645 (SE337_03630) - 661285..662307 (-) 1023 WP_054076533.1 outer membrane protein assembly factor BamD -
  SE337_RS03650 (SE337_03635) rluD 662457..663419 (+) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  SE337_RS03655 (SE337_03640) pgeF 663416..664144 (+) 729 WP_054076534.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 57977.82 Da        Isoelectric Point: 6.8227

>NTDB_id=902477 SE337_RS03635 WP_054076532.1 659334..660926(-) (pilS) [Pseudomonas amygdali pv. sesami strain DFR141]
MTADTPSLASPQAQRILRLYHLYRLTIGVVLVLLISSSLETELLQLANPNLFRSGCWLYLVFNILVVVLLERPSRQAQLF
SLAMTDAIMLSALFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARMQVSEVLAEQRAADVDSLEELNALILQRMRTGILVLDANRQVLLANQGALTLLGHERLVGQVID
AYSPQLVERLRQWLVNPIMVPRSVTTSPIGPVLQPSFAALNRGDQRQTLIFLEDLSQIAHQAQQLKLTALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELSAADRRLGQIIHDQSGRIDRVIENVLQLSRRREAQPELLDLKTWLENFVAEFRSAAMAG
QSVHVDISPGTLTTRMDSGQLTQIMTNLLQNGLRYSGRNHSSAQVWLKLHHDRQSDLPILEVQDDGPGVSEQHLAKLFEP
FFTTESKGTGLGLYLSRELCESNQAHLEYVPPQGGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=902477 SE337_RS03635 WP_054076532.1 659334..660926(-) (pilS) [Pseudomonas amygdali pv. sesami strain DFR141]
GTGACCGCTGACACGCCCTCGCTTGCCAGCCCACAGGCGCAAAGGATTCTGCGGCTTTACCACCTTTATCGGCTAACCAT
CGGCGTGGTACTGGTCCTGCTGATTTCCAGCAGTCTGGAAACCGAACTGTTGCAACTGGCCAATCCAAACCTGTTCCGCT
CGGGTTGCTGGCTGTATCTGGTGTTCAACATTCTGGTCGTCGTGCTGCTGGAGCGTCCCAGCCGTCAGGCGCAGCTGTTC
AGTCTGGCAATGACTGACGCAATCATGCTCTCTGCGCTGTTCTACGCGGCGGGTGGCCCTTCCAGCGGCATCGGCAATCT
GTTGATTGCTTCCGTAGCAATCAGCAATGTATTGCTGCGGGGCCGTATCGGTTTGCTGATCGCCGCCGTTTCTGCCATCG
GCATCATCTACCTGACGTTCTATATCAGCTTCGGTACACCGTCGGTTTCCAACGACTACGTGCAGGCTGGCTCTCTGGGT
GCCCTGTGCTTCGCCGCCGCACTGCTAGTGCAGGCGCTGACAGCGCGCATGCAGGTCAGCGAAGTGCTGGCCGAACAGCG
TGCAGCGGATGTCGACAGCCTTGAAGAACTCAACGCACTGATCCTGCAACGCATGCGTACCGGCATTCTGGTACTGGATG
CCAACCGTCAGGTGCTGCTGGCCAATCAAGGTGCCCTTACCCTACTGGGCCACGAGCGACTGGTCGGCCAGGTTATCGAC
GCTTACTCGCCGCAGTTGGTGGAACGCCTGCGCCAGTGGCTCGTCAACCCGATCATGGTGCCGCGCAGCGTCACGACTTC
ACCCATCGGGCCGGTGCTGCAACCGAGCTTTGCCGCACTCAATCGTGGCGATCAGCGCCAGACGCTGATCTTTCTTGAAG
ACCTGTCGCAAATTGCTCATCAGGCGCAGCAGCTCAAGCTCACCGCACTGGGACGCCTGACCGCCGGGATTGCCCACGAG
ATACGCAACCCGCTGGGCGCAGTCAGCCATGCCGCACAGTTGCTCAACGAATCTGAAGAACTCAGCGCAGCGGACCGACG
CCTGGGGCAGATCATTCATGACCAGTCGGGGCGTATTGATCGGGTCATCGAAAATGTTCTGCAATTGTCGCGCAGACGCG
AAGCGCAGCCCGAACTGCTGGACCTGAAAACCTGGCTGGAAAACTTTGTTGCCGAGTTTCGCAGCGCCGCCATGGCCGGA
CAGTCGGTTCATGTCGACATCAGCCCCGGAACGCTGACAACCCGCATGGATTCAGGGCAACTGACACAGATCATGACCAA
CCTGCTACAGAACGGCCTGCGCTACAGCGGCAGAAATCATTCGTCAGCGCAGGTCTGGCTGAAGCTGCATCACGACCGAC
AAAGCGATTTGCCCATTCTGGAAGTACAGGACGACGGGCCAGGGGTCAGCGAGCAACATTTGGCCAAGCTATTCGAGCCG
TTTTTCACCACGGAAAGCAAAGGCACCGGTCTTGGTCTATATCTGTCACGCGAGCTTTGCGAAAGCAATCAGGCGCACCT
GGAATACGTCCCGCCGCAAGGTGGCGGCAGTTGTCTGCGCATAACCTTCGCCCACCCGTTCAAAACGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.205

100

0.613