Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABH545_RS10740 Genome accession   NZ_CP157151
Coordinates   2000301..2000930 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain UTAK-6     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1995301..2005930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABH545_RS10720 (ABH545_10715) ycbZ 1995702..1997462 (-) 1761 WP_000156526.1 Lon protease family protein -
  ABH545_RS10725 (ABH545_10720) matP 1997648..1998100 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ABH545_RS10730 (ABH545_10725) ompA 1998176..1999216 (-) 1041 WP_000750416.1 porin OmpA -
  ABH545_RS10735 (ABH545_10730) sulA 1999573..2000082 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ABH545_RS10740 (ABH545_10735) sxy/tfoX 2000301..2000930 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABH545_RS10745 (ABH545_10740) yccS 2000893..2003055 (-) 2163 WP_000875044.1 YccS family putative transporter -
  ABH545_RS10750 (ABH545_10745) yccF 2003065..2003511 (-) 447 WP_001261231.1 YccF domain-containing protein -
  ABH545_RS10755 (ABH545_10750) helD 2003634..2005688 (+) 2055 WP_347948141.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=902367 ABH545_RS10740 WP_000839153.1 2000301..2000930(+) (sxy/tfoX) [Escherichia coli strain UTAK-6]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=902367 ABH545_RS10740 WP_000839153.1 2000301..2000930(+) (sxy/tfoX) [Escherichia coli strain UTAK-6]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1