Detailed information NTG0902233

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: SE859_RS01090
• Genome accession: NZ_CP138367
• Coordinates: 187970..189013 (+)
• Length: 347 a.a.
• NCBI ID: WP_223295592.1
• Uniprot ID: -
• Organism: Streptococcus agalactiae strain R31-snf2-MTase2
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 182970..194013

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SE859_RS01080 (SE859_01080)	-	186567..186932 (+)	366	WP_000285373.1	DUF1033 family protein	-
SE859_RS01085 (SE859_01085)	comYA	187105..188076 (+)	972	WP_000250808.1	competence type IV pilus ATPase ComGA	Machinery gene
SE859_RS01090 (SE859_01090)	comYB	187970..189013 (+)	1044	WP_223295592.1	competence type IV pilus assembly protein ComGB	Machinery gene
SE859_RS01095 (SE859_01095)	comYD	189010..189438 (+)	429	WP_000793381.1	competence type IV pilus minor pilin ComGD	Machinery gene
SE859_RS01100 (SE859_01100)	comGE	189410..189709 (+)	300	WP_001867089.1	competence type IV pilus minor pilin ComGE	-
SE859_RS01105 (SE859_01105)	comGF	189663..190124 (+)	462	WP_001874060.1	competence type IV pilus minor pilin ComGF	-
SE859_RS01110 (SE859_01110)	comGG	190102..190473 (+)	372	WP_000601104.1	competence type IV pilus minor pilin ComGG	-
SE859_RS01115 (SE859_01115)	comYH	190588..191562 (+)	975	WP_001008570.1	class I SAM-dependent methyltransferase	Machinery gene
SE859_RS01120 (SE859_01120)	-	191594..192787 (+)	1194	WP_000047535.1	acetate kinase	-
SE859_RS01125 (SE859_01125)	-	192938..193144 (+)	207	WP_000798242.1	helix-turn-helix transcriptional regulator	-
SE859_RS01130 (SE859_01130)	-	193203..193340 (+)	138	WP_001867090.1	hypothetical protein	-
SE859_RS01135 (SE859_01135)	-	193381..193836 (+)	456	WP_000905674.1	hypothetical protein	-

Sequence

Protein

• Length: 347 a.a.
• Molecular weight: 40005.70 Da
• Isoelectric Point: 9.9365

>NTDB_id=902233 SE859_RS01090 WP_223295592.1 187970..189013(+) (comYB) [Streptococcus agalactiae strain R31-snf2-MTase2]
MDKWISWLKKDISVRNRHKSKKLSLKKQRKVVQLFNNLFASGFSLTDMVTFLKRSKLLSDYYTDRMNKALLEGKDLSKML
GELGFSDTVITQVALADLHGNISRSLLKIESYLANLLLVRKKVIEVATYPLILLTFLVLIMIGLRHYLMPQLGENNFATS
LITNVPNIFLLLLAVVLIFSLIFYIVQKRLSRIKVACFLTTIPLVGSYVKLYLTAYYAREWGNLLSQGVELDQIVKVMQN
QKSKLFREIGYDMEEGFLSGKAFHQKVLDYPFFLTELSLMIEYGQVKAKLGTELDIYADEKWEDFFTKLARATQLIQPVI
FIFVALIIVMIYAAMLLPMYQNMEILS

Nucleotide

• Length: 1044 bp

>NTDB_id=902233 SE859_RS01090 WP_223295592.1 187970..189013(+) (comYB) [Streptococcus agalactiae strain R31-snf2-MTase2]
ATAGACAAGTGGATATCTTGGCTGAAGAAGGACATATCAGTAAGAAACAGGCACAAGTCGAAAAAATTATCCCTCAAGAA
ACAACGGAAAGTAGTCCAACTTTTTAATAATCTTTTTGCTAGTGGTTTTTCTTTAACTGATATGGTCACCTTCTTAAAGA
GGAGTAAGTTATTGTCTGATTATTATACAGATAGGATGAATAAGGCATTATTAGAGGGAAAAGATTTATCAAAAATGTTA
GGAGAGTTAGGTTTTTCTGACACTGTTATCACACAGGTTGCATTAGCTGATTTGCATGGTAACATTTCAAGGAGCCTACT
AAAGATTGAGTCTTATTTAGCTAATCTTTTGTTAGTTAGAAAAAAAGTAATAGAAGTAGCTACTTACCCATTGATATTAT
TGACTTTTCTGGTGCTAATTATGATTGGTCTTAGGCATTATTTAATGCCCCAATTAGGAGAAAATAATTTTGCAACTAGC
CTGATTACAAATGTGCCGAATATTTTCTTATTACTTTTAGCAGTTGTACTTATTTTTAGTTTAATATTTTATATTGTTCA
AAAGCGATTGTCGCGTATTAAAGTAGCTTGTTTTTTAACAACAATTCCCTTAGTTGGATCATATGTTAAGCTTTATTTAA
CTGCTTACTATGCCCGTGAGTGGGGAAATTTATTAAGTCAAGGTGTTGAATTGGACCAAATTGTTAAAGTAATGCAAAAT
CAGAAATCCAAACTTTTTAGGGAAATAGGATATGACATGGAAGAAGGTTTTCTATCAGGTAAAGCATTTCACCAAAAAGT
ATTAGACTATCCGTTTTTCTTAACTGAGCTTAGTTTAATGATTGAATATGGCCAAGTTAAGGCGAAATTAGGAACAGAGT
TAGATATATATGCTGATGAGAAGTGGGAGGATTTTTTTACAAAATTAGCTAGAGCGACCCAGTTAATCCAACCTGTTATT
TTTATTTTTGTAGCTCTTATCATTGTTATGATTTATGCAGCAATGCTGTTACCAATGTATCAAAATATGGAGATATTATC
ATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (218-338)

• Type II secretion system (T2SS), protein F (T2SSF) (33-150)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	61.877	98.271	0.608
comYB	Streptococcus mutans UA159	61.584	98.271	0.605
comYB	Streptococcus gordonii str. Challis substr. CH1	56.305	98.271	0.553
comGB/cglB	Streptococcus mitis NCTC 12261	54.925	96.542	0.53
comGB/cglB	Streptococcus mitis SK321	54.328	96.542	0.524
comGB/cglB	Streptococcus pneumoniae Rx1	53.433	96.542	0.516
comGB/cglB	Streptococcus pneumoniae D39	53.433	96.542	0.516
comGB/cglB	Streptococcus pneumoniae R6	53.433	96.542	0.516
comGB/cglB	Streptococcus pneumoniae TIGR4	53.433	96.542	0.516
comGB	Lactococcus lactis subsp. cremoris KW2	49.852	97.118	0.484