Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABH539_RS25595 Genome accession   NZ_CP157110
Coordinates   5076768..5077304 (-) Length   178 a.a.
NCBI ID   WP_064560045.1    Uniprot ID   -
Organism   Escherichia coli strain UTME-9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5071768..5082304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABH539_RS25575 (ABH539_25620) soxR 5073496..5073960 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  ABH539_RS25580 (ABH539_25625) soxS 5074046..5074369 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  ABH539_RS25585 (ABH539_25630) pdeC 5074372..5075958 (-) 1587 WP_000019527.1 c-di-GMP phosphodiesterase PdeC -
  ABH539_RS25590 (ABH539_25635) yjcB 5076388..5076669 (+) 282 WP_001341690.1 YjcB family protein -
  ABH539_RS25595 (ABH539_25640) ssb 5076768..5077304 (-) 537 WP_064560045.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ABH539_RS25600 (ABH539_25645) uvrA 5077558..5080380 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  ABH539_RS25605 (ABH539_25650) yjbR 5080415..5080771 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  ABH539_RS25610 (ABH539_25655) yjbQ 5080775..5081191 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ABH539_RS25615 (ABH539_25660) aphA 5081302..5082015 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18989.02 Da        Isoelectric Point: 5.2358

>NTDB_id=902169 ABH539_RS25595 WP_064560045.1 5076768..5077304(-) (ssb) [Escherichia coli strain UTME-9]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRIVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=902169 ABH539_RS25595 WP_064560045.1 5076768..5077304(-) (ssb) [Escherichia coli strain UTME-9]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCATTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.747
  ssb Glaesserella parasuis strain SC1401

58.47

100

0.601
  ssb Neisseria meningitidis MC58

48.619

100

0.494
  ssb Neisseria gonorrhoeae MS11

48.619

100

0.494