Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   SE087_RS07785 Genome accession   NZ_CP138360
Coordinates   1614180..1614677 (-) Length   165 a.a.
NCBI ID   WP_319078544.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 17CS1042     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1609180..1619677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE087_RS07760 (SE087_07760) gcvPB 1609342..1610814 (-) 1473 WP_000202180.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  SE087_RS07765 (SE087_07765) gcvPA 1610807..1612153 (-) 1347 WP_217175765.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  SE087_RS07770 (SE087_07770) gcvT 1612173..1613264 (-) 1092 WP_000093354.1 glycine cleavage system aminomethyltransferase GcvT -
  SE087_RS07775 (SE087_07775) - 1613423..1613947 (-) 525 WP_217175766.1 shikimate kinase -
  SE087_RS07780 (SE087_07780) - 1613937..1614083 (-) 147 WP_001789879.1 hypothetical protein -
  SE087_RS07785 (SE087_07785) comGF 1614180..1614677 (-) 498 WP_319078544.1 competence type IV pilus minor pilin ComGF Machinery gene
  SE087_RS07790 (SE087_07790) comGE 1614595..1614894 (-) 300 WP_217175767.1 competence protein ComGE Machinery gene
  SE087_RS07795 (SE087_07795) comGD 1614881..1615327 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  SE087_RS07800 (SE087_07800) comGC 1615305..1615616 (-) 312 WP_217175768.1 competence type IV pilus major pilin ComGC Machinery gene
  SE087_RS07805 (SE087_07805) comGB 1615630..1616700 (-) 1071 WP_197840165.1 competence type IV pilus assembly protein ComGB Machinery gene
  SE087_RS07810 (SE087_07810) comGA 1616672..1617646 (-) 975 Protein_1535 competence type IV pilus ATPase ComGA -
  SE087_RS07815 (SE087_07815) - 1617698..1618321 (-) 624 WP_179321523.1 MBL fold metallo-hydrolase -
  SE087_RS07820 (SE087_07820) - 1618303..1618647 (-) 345 WP_217175769.1 MTH1187 family thiamine-binding protein -
  SE087_RS07825 (SE087_07825) - 1618647..1619633 (-) 987 WP_000161315.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19189.95 Da        Isoelectric Point: 10.2192

>NTDB_id=902118 SE087_RS07785 WP_319078544.1 1614180..1614677(-) (comGF) [Staphylococcus aureus strain 17CS1042]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFPRDI
LEDFKGVDRNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITLINNVTAFTANIYYKSIIKITITVKVGTNLQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=902118 SE087_RS07785 WP_319078544.1 1614180..1614677(-) (comGF) [Staphylococcus aureus strain 17CS1042]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTTATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAGTTAACAACTGTAGATTTCGAATTTTTCCCAAGAGATATT
CTAGAGGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACATTGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCTATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATCTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)

Putative Competence protein ComGF (ComGF)

(70-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

97.576

100

0.976
  comGF Staphylococcus aureus MW2

96.364

100

0.964