Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   SE087_RS07805 Genome accession   NZ_CP138360
Coordinates   1615630..1616700 (-) Length   356 a.a.
NCBI ID   WP_197840165.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 17CS1042     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1610630..1621700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE087_RS07765 (SE087_07765) gcvPA 1610807..1612153 (-) 1347 WP_217175765.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  SE087_RS07770 (SE087_07770) gcvT 1612173..1613264 (-) 1092 WP_000093354.1 glycine cleavage system aminomethyltransferase GcvT -
  SE087_RS07775 (SE087_07775) - 1613423..1613947 (-) 525 WP_217175766.1 shikimate kinase -
  SE087_RS07780 (SE087_07780) - 1613937..1614083 (-) 147 WP_001789879.1 hypothetical protein -
  SE087_RS07785 (SE087_07785) comGF 1614180..1614677 (-) 498 WP_319078544.1 competence type IV pilus minor pilin ComGF Machinery gene
  SE087_RS07790 (SE087_07790) comGE 1614595..1614894 (-) 300 WP_217175767.1 competence protein ComGE Machinery gene
  SE087_RS07795 (SE087_07795) comGD 1614881..1615327 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  SE087_RS07800 (SE087_07800) comGC 1615305..1615616 (-) 312 WP_217175768.1 competence type IV pilus major pilin ComGC Machinery gene
  SE087_RS07805 (SE087_07805) comGB 1615630..1616700 (-) 1071 WP_197840165.1 competence type IV pilus assembly protein ComGB Machinery gene
  SE087_RS07810 (SE087_07810) comGA 1616672..1617646 (-) 975 Protein_1535 competence type IV pilus ATPase ComGA -
  SE087_RS07815 (SE087_07815) - 1617698..1618321 (-) 624 WP_179321523.1 MBL fold metallo-hydrolase -
  SE087_RS07820 (SE087_07820) - 1618303..1618647 (-) 345 WP_217175769.1 MTH1187 family thiamine-binding protein -
  SE087_RS07825 (SE087_07825) - 1618647..1619633 (-) 987 WP_000161315.1 ROK family glucokinase -
  SE087_RS07830 (SE087_07830) - 1619630..1619833 (-) 204 WP_000087561.1 YqgQ family protein -
  SE087_RS07835 (SE087_07835) - 1619814..1621277 (-) 1464 WP_001017867.1 rhomboid family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41461.87 Da        Isoelectric Point: 10.0606

>NTDB_id=902122 SE087_RS07805 WP_197840165.1 1615630..1616700(-) (comGB) [Staphylococcus aureus strain 17CS1042]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNKLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYQNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=902122 SE087_RS07805 WP_197840165.1 1615630..1616700(-) (comGB) [Staphylococcus aureus strain 17CS1042]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGCACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAGATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATCATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATTTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCGTTTTTCATTACCAGCTTACCTACAATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAGTTGATTTATAACAAATTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATCAAAATGGTATTACGCTTCAA
TCAATAGTAGATGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAATTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.438

100

0.994
  comGB Staphylococcus aureus N315

99.438

100

0.994