Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   SE087_RS04845 Genome accession   NZ_CP138360
Coordinates   1002254..1002823 (-) Length   189 a.a.
NCBI ID   WP_319095468.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 17CS1042     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 997254..1007823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE087_RS04825 (SE087_04825) - 998757..1000115 (+) 1359 WP_000021871.1 TrkH family potassium uptake protein -
  SE087_RS04830 (SE087_04830) - 1000254..1001765 (+) 1512 WP_000414178.1 bifunctional metallophosphatase/5'-nucleotidase -
  SE087_RS04845 (SE087_04845) comK/comK1 1002254..1002823 (-) 570 WP_319095468.1 competence protein ComK Regulator
  SE087_RS04850 (SE087_04850) - 1003032..1003250 (+) 219 WP_046597402.1 IDEAL domain-containing protein -
  SE087_RS04855 (SE087_04855) - 1003331..1004317 (-) 987 WP_000668812.1 lipoate--protein ligase -
  SE087_RS04860 (SE087_04860) - 1004516..1004692 (+) 177 WP_000214898.1 YkvS family protein -
  SE087_RS04865 (SE087_04865) - 1004707..1005309 (+) 603 WP_001033867.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  SE087_RS04870 (SE087_04870) - 1005629..1005691 (+) 63 WP_228764722.1 hypothetical protein -
  SE087_RS04875 (SE087_04875) - 1006327..1006611 (+) 285 WP_000790905.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22575.79 Da        Isoelectric Point: 9.6091

>NTDB_id=902111 SE087_RS04845 WP_319095468.1 1002254..1002823(-) (comK/comK1) [Staphylococcus aureus strain 17CS1042]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFATHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=902111 SE087_RS04845 WP_319095468.1 1002254..1002823(-) (comK/comK1) [Staphylococcus aureus strain 17CS1042]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGAAA
TGGTAGCGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGCAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCGCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATTAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCAATCATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTATTACATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

99.471

100

0.995
  comK/comK1 Staphylococcus aureus N315

99.471

100

0.995