Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SD207_RS00965 Genome accession   NZ_CP138324
Coordinates   213340..213921 (+) Length   193 a.a.
NCBI ID   WP_318787765.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain JBAB     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 208340..218921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD207_RS00940 (SD207_00940) - 208961..209314 (+) 354 WP_000580164.1 DUF1304 domain-containing protein -
  SD207_RS00945 (SD207_00945) - 209367..209708 (+) 342 WP_000263329.1 GlpM family protein -
  SD207_RS00950 (SD207_00950) tenA 209758..210432 (-) 675 WP_000899418.1 thiaminase II -
  SD207_RS00955 (SD207_00955) - 210695..211777 (+) 1083 WP_162280869.1 DUF475 domain-containing protein -
  SD207_RS00960 (SD207_00960) - 211924..213288 (+) 1365 WP_000980460.1 MFS transporter -
  SD207_RS00965 (SD207_00965) ssb 213340..213921 (+) 582 WP_318787765.1 single-stranded DNA-binding protein Machinery gene
  SD207_RS00970 (SD207_00970) - 213962..214285 (-) 324 WP_000082712.1 AzlD domain-containing protein -
  SD207_RS00975 (SD207_00975) - 214282..214977 (-) 696 WP_025467916.1 AzlC family ABC transporter permease -
  SD207_RS00980 (SD207_00980) - 215046..215594 (+) 549 WP_002048207.1 helix-turn-helix domain-containing protein -
  SD207_RS00985 (SD207_00985) - 215900..217342 (+) 1443 WP_000718865.1 amino acid permease -
  SD207_RS00990 (SD207_00990) - 217401..218900 (-) 1500 WP_001257162.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20992.83 Da        Isoelectric Point: 6.4822

>NTDB_id=901743 SD207_RS00965 WP_318787765.1 213340..213921(+) (ssb) [Acinetobacter baumannii strain JBAB]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKNTGERKEQTEWHRIILHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNQGGGYGQNNGGYGGQGGF
GNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=901743 SD207_RS00965 WP_318787765.1 213340..213921(+) (ssb) [Acinetobacter baumannii strain JBAB]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAGTTTTCTATCGCAACAAGTGAAGTTTGGACCGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTATTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTATATCGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGTCAAGAACGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTTGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCGCCTCAAC
AAGGTGGCGGCTATCAAAATAACAACCAAGGTGGTGGCTACGGCCAAAACAATGGTGGTTATGGTGGCCAAGGTGGTTTC
GGTAATGGTGGCAATAGCCCACAAGGTGGTGGTTTCGCTCCTAAAGCGCCACAACAACCAGCATCTGCACCAGCTGATTT
AGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51

100

0.528
  ssb Vibrio cholerae strain A1552

43.564

100

0.456
  ssb Neisseria meningitidis MC58

38.579

100

0.394
  ssb Neisseria gonorrhoeae MS11

38.579

100

0.394