Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SC043_RS03935 Genome accession   NZ_CP138309
Coordinates   746311..747300 (+) Length   329 a.a.
NCBI ID   WP_010906110.1    Uniprot ID   A0AAC9W770
Organism   Lactococcus lactis strain B26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 741311..752300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC043_RS03915 (SC043_03915) - 741452..742288 (-) 837 WP_003130402.1 Cof-type HAD-IIB family hydrolase -
  SC043_RS03920 (SC043_03920) - 742595..744016 (+) 1422 WP_003130403.1 NCS2 family permease -
  SC043_RS03925 (SC043_03925) - 744208..745056 (+) 849 WP_010906111.1 alpha/beta hydrolase -
  SC043_RS03930 (SC043_03930) - 745218..746237 (+) 1020 WP_023349290.1 YdcF family protein -
  SC043_RS03935 (SC043_03935) coiA 746311..747300 (+) 990 WP_010906110.1 competence protein CoiA Machinery gene
  SC043_RS03940 (SC043_03940) pepF 747363..749168 (+) 1806 WP_003132689.1 oligoendopeptidase F Regulator
  SC043_RS03945 (SC043_03945) - 749171..749854 (+) 684 WP_010906108.1 O-methyltransferase -
  SC043_RS03950 (SC043_03950) - 750008..750934 (+) 927 WP_010906107.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 39426.97 Da        Isoelectric Point: 8.0231

>NTDB_id=901701 SC043_RS03935 WP_010906110.1 746311..747300(+) (coiA) [Lactococcus lactis strain B26]
MLTAIDENGQVVNLLEIEVKELTGKYFCPSCKSELFIKNGEIKMPHFAHKSLKACDLWLENESEQHLGLKKALYQWFKKT
DKVEIEAYIPEFKQRPDLLVNDTIAIEIQCSHLSMKRLKERTENYQVHGFTVLWLMGQDLWLKDQITELQKNLVYFSENR
GFYYWELDFKAQKMRLKSLIHEDLRGKIIYLQEEIPFGEGRLIEQLRLPFLSQKLLTIPLIVDLKLAEFIRRQLYYCSPK
WLKLQEKYYQRGENLLNLTFERSFIAPLGLNLLEVFDDEIPLHKFTQIKQNINLYYENFLINFQQNSFKAVYPPRFYVIM
KKQKKDMNE

Nucleotide


Download         Length: 990 bp        

>NTDB_id=901701 SC043_RS03935 WP_010906110.1 746311..747300(+) (coiA) [Lactococcus lactis strain B26]
ATGTTGACAGCAATTGATGAAAATGGACAAGTAGTAAACTTATTAGAAATAGAAGTAAAAGAACTGACAGGAAAATATTT
TTGTCCTTCTTGTAAATCAGAGTTATTTATAAAAAATGGTGAAATAAAGATGCCTCACTTTGCTCATAAATCTCTCAAAG
CTTGCGACTTATGGCTTGAAAACGAATCTGAACAACATTTAGGATTAAAAAAAGCACTCTATCAATGGTTTAAAAAAACT
GATAAGGTGGAAATTGAAGCTTATATTCCTGAATTTAAGCAGAGGCCAGATTTATTGGTAAATGATACAATAGCTATTGA
AATTCAATGTTCTCATCTTTCTATGAAACGTTTAAAAGAAAGGACAGAGAATTATCAAGTCCACGGTTTTACGGTACTTT
GGCTTATGGGGCAAGATTTATGGTTAAAAGACCAAATAACAGAACTTCAAAAAAATCTAGTCTATTTTTCAGAAAATAGA
GGTTTCTATTATTGGGAGTTAGATTTCAAAGCTCAGAAGATGAGATTAAAATCCCTGATTCATGAAGATTTGCGTGGAAA
AATTATTTATTTACAAGAAGAAATTCCTTTTGGGGAAGGACGACTTATTGAGCAATTACGACTGCCTTTTTTATCACAAA
AGTTACTGACAATACCACTTATTGTTGATCTTAAACTAGCGGAATTTATTCGTCGGCAACTTTATTATTGTTCACCAAAA
TGGTTGAAACTTCAGGAAAAATATTACCAAAGAGGTGAAAATTTGTTGAATTTGACTTTTGAACGTTCTTTTATTGCGCC
TTTGGGGTTGAACTTACTTGAAGTTTTTGATGATGAAATCCCTTTACATAAATTTACTCAAATTAAGCAGAATATTAATC
TCTATTATGAAAACTTTTTAATAAATTTTCAGCAAAATAGCTTTAAGGCAGTCTATCCTCCCCGTTTCTATGTTATAATG
AAAAAGCAGAAGAAGGATATGAATGAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

74.847

99.088

0.742
  coiA Streptococcus mitis NCTC 12261

43.789

97.872

0.429
  coiA Streptococcus pneumoniae TIGR4

43.478

97.872

0.426
  coiA Streptococcus pneumoniae Rx1

43.478

97.872

0.426
  coiA Streptococcus pneumoniae D39

43.478

97.872

0.426
  coiA Streptococcus pneumoniae R6

43.478

97.872

0.426