Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   TthTMY_RS02925 Genome accession   NZ_AP025158
Coordinates   509414..510292 (-) Length   292 a.a.
NCBI ID   WP_096412264.1    Uniprot ID   -
Organism   Thermus thermophilus strain TMY     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 504414..515292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TthTMY_RS02910 (TthTMY_05720) - 505360..505914 (-) 555 WP_096412256.1 shikimate kinase -
  TthTMY_RS02915 (TthTMY_05730) aroC 505934..507085 (-) 1152 WP_096412258.1 chorismate synthase -
  TthTMY_RS02920 (TthTMY_05740) pilQ 507144..509417 (-) 2274 WP_096412261.1 secretin N-terminal domain-containing protein Machinery gene
  TthTMY_RS02925 (TthTMY_05750) pilW 509414..510292 (-) 879 WP_096412264.1 competence protein Machinery gene
  TthTMY_RS02930 (TthTMY_05760) pilO 510289..510870 (-) 582 WP_096412267.1 type 4a pilus biogenesis protein PilO Machinery gene
  TthTMY_RS02935 (TthTMY_05770) pilN 510860..511483 (-) 624 WP_223903394.1 flagellar protein FliT Machinery gene
  TthTMY_RS02940 (TthTMY_05780) pilM 511476..512609 (-) 1134 WP_096412270.1 type IV pilus assembly protein PilM Machinery gene
  TthTMY_RS02945 (TthTMY_05790) - 512744..513748 (-) 1005 WP_096412273.1 homoisocitrate dehydrogenase -
  TthTMY_RS02950 (TthTMY_05800) - 513803..514294 (-) 492 WP_096413136.1 DUF5317 domain-containing protein -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 30012.63 Da        Isoelectric Point: 4.5269

>NTDB_id=90165 TthTMY_RS02925 WP_096412264.1 509414..510292(-) (pilW) [Thermus thermophilus strain TMY]
MKNAWQRLKEAWENLPRSTKILLAALLLVGNVALWYVGLYLPAQVTEAPTPAPSTQVIEAPPIPPLAPQEEAKPQAEAPA
QGEGQAPTSPQEEAQAPPPAPVARAEPPPPNPFVPLVVETPPPPPAPASRPAPVPEGPPVRVQPPAPAPRAAPATRPIPG
TSGALPAPKVLSPALAAPLPEPKETPPKVALPTALVEAPLPGPEERGAEEPPTPASPLERLVAEKGLRLSGTLLGPVSVA
ILESKEGYLVVPVGSPIPGTEAVVRQVEEGSVTLALKEETLNLSLVQAGGGQ

Nucleotide


Download         Length: 879 bp        

>NTDB_id=90165 TthTMY_RS02925 WP_096412264.1 509414..510292(-) (pilW) [Thermus thermophilus strain TMY]
ATGAAGAACGCCTGGCAACGCCTGAAGGAAGCCTGGGAAAACCTGCCCAGGTCCACCAAGATCCTCCTGGCGGCCCTCCT
TCTCGTGGGGAACGTGGCCCTTTGGTACGTGGGCCTCTACCTCCCGGCCCAGGTGACGGAAGCGCCCACCCCAGCCCCCT
CCACGCAGGTCATTGAGGCCCCGCCAATCCCGCCCCTCGCCCCCCAGGAAGAGGCCAAGCCACAGGCCGAAGCCCCGGCC
CAAGGGGAGGGCCAGGCGCCCACTTCTCCCCAAGAGGAGGCCCAGGCGCCCCCGCCTGCCCCCGTGGCCCGGGCCGAGCC
TCCGCCCCCGAACCCCTTCGTCCCCCTGGTGGTGGAAACCCCACCCCCACCTCCGGCCCCCGCCTCCCGCCCGGCGCCCG
TCCCCGAGGGACCCCCCGTCCGGGTCCAGCCCCCCGCCCCGGCCCCCCGGGCGGCCCCCGCCACCCGGCCCATTCCCGGG
ACCTCCGGCGCCCTCCCGGCGCCCAAGGTCCTCTCCCCCGCCCTGGCCGCCCCCCTGCCCGAGCCCAAGGAAACGCCGCC
TAAGGTCGCCCTGCCCACGGCGCTCGTGGAGGCCCCCCTCCCCGGGCCCGAGGAAAGAGGGGCGGAGGAGCCCCCCACCC
CGGCCTCGCCGCTGGAGCGCCTGGTGGCGGAAAAGGGGCTCCGCCTCTCGGGGACCCTCCTCGGCCCCGTGAGCGTGGCC
ATCCTGGAGAGCAAGGAGGGCTACCTCGTCGTCCCGGTGGGAAGCCCCATCCCCGGCACGGAGGCCGTGGTGCGCCAGGT
GGAGGAAGGAAGCGTGACCCTGGCCTTGAAGGAGGAAACCTTGAACTTGTCCCTCGTCCAAGCTGGAGGTGGCCAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Thermus thermophilus HB27

91.096

100

0.911

Multiple sequence alignment