Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SC318_RS23715 Genome accession   NZ_CP138214
Coordinates   5263446..5263961 (-) Length   171 a.a.
NCBI ID   WP_003232445.1    Uniprot ID   A0A0W0N9K8
Organism   Pseudomonas sp. MUP55     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5258446..5268961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC318_RS23690 (SC318_23690) - 5259776..5259919 (+) 144 WP_306494818.1 hypothetical protein -
  SC318_RS23695 (SC318_23695) - 5259945..5261264 (+) 1320 WP_320428681.1 aspartate aminotransferase family protein -
  SC318_RS23700 (SC318_23700) - 5261330..5261932 (+) 603 WP_320428682.1 formyltransferase family protein -
  SC318_RS23705 (SC318_23705) - 5262013..5262642 (+) 630 WP_320428683.1 LysE family translocator -
  SC318_RS23710 (SC318_23710) - 5262729..5263340 (+) 612 WP_306494821.1 LysE family translocator -
  SC318_RS23715 (SC318_23715) ssb 5263446..5263961 (-) 516 WP_003232445.1 single-stranded DNA-binding protein Machinery gene
  SC318_RS23720 (SC318_23720) - 5263971..5265365 (-) 1395 WP_306494822.1 MFS transporter -
  SC318_RS23725 (SC318_23725) uvrA 5265544..5268378 (+) 2835 WP_320428684.1 excinuclease ABC subunit UvrA -
  SC318_RS23730 (SC318_23730) bfr 5268443..5268907 (-) 465 WP_065930320.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19015.19 Da        Isoelectric Point: 5.9455

>NTDB_id=901469 SC318_RS23715 WP_003232445.1 5263446..5263961(-) (ssb) [Pseudomonas sp. MUP55]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=901469 SC318_RS23715 WP_003232445.1 5263446..5263961(-) (ssb) [Pseudomonas sp. MUP55]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCCAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACTGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAAGTGGCTGAGATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGGTGTACATCGAA
GGCAAACTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAAATCGTCGTCGACATGCAAGGCAC
CATGCAGCTGCTGGGTGGCCGTCCACAGGGCGACCAGCAGGGCCAGGGCGGCATGTCCAACTCGGCACCGCGCCCACAGC
AATCGCGTCCACAGCCAAGCCAGCAGCCTCAGCGTGAGTCGCGTCCAGCGCCACAACAGGCCGCTCCACAGCCGGCTCCG
GATTTCGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0N9K8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.614
  ssb Glaesserella parasuis strain SC1401

45.833

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.497
  ssb Neisseria meningitidis MC58

46.023

100

0.474