Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R6238_RS17755 Genome accession   NZ_CP138212
Coordinates   4119632..4120198 (+) Length   188 a.a.
NCBI ID   WP_003317093.1    Uniprot ID   A0A0P9GWC5
Organism   Pseudomonas syringae pv. syringae strain pss-2019     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4114632..4125198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6238_RS17740 bfr 4114705..4115169 (+) 465 WP_003317095.1 bacterioferritin -
  R6238_RS17745 uvrA 4115264..4118098 (-) 2835 WP_016569110.1 excinuclease ABC subunit UvrA -
  R6238_RS17750 - 4118228..4119622 (+) 1395 WP_010438218.1 MFS transporter -
  R6238_RS17755 ssb 4119632..4120198 (+) 567 WP_003317093.1 single-stranded DNA-binding protein Machinery gene
  R6238_RS17760 - 4120328..4121440 (-) 1113 WP_024961317.1 endo-1,4-beta-xylanase -
  R6238_RS17765 - 4121440..4122183 (-) 744 WP_003317091.1 inositol monophosphatase family protein -
  R6238_RS17770 - 4122180..4122941 (-) 762 WP_003317090.1 glycerophosphoryl diester phosphodiesterase -
  R6238_RS17775 - 4122948..4124054 (-) 1107 WP_004394159.1 ABC transporter ATP-binding protein -
  R6238_RS17780 - 4124051..4124944 (-) 894 WP_003419594.1 ABC transporter permease subunit -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20917.05 Da        Isoelectric Point: 5.9404

>NTDB_id=901450 R6238_RS17755 WP_003317093.1 4119632..4120198(+) (ssb) [Pseudomonas syringae pv. syringae strain pss-2019]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPPQ
QRDSRPAPQQQAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=901450 R6238_RS17755 WP_003317093.1 4119632..4120198(+) (ssb) [Pseudomonas syringae pv. syringae strain pss-2019]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACTGACAAGCAGTCCGGTCAGAAAGTCGAAAAGACCGAAT
GGCACCGTGTATCGATGTTCGGCAAAGTCGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACGACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAACAAGGTCAGGGCGGCGGAAACTACAACCAGTCCGCACCTC
GTCCACAGCAGTCGCGTCCACAACAGTCAGCGCCCCAGCAATCTGCACCTCAGCAGAACTACAACCAGCAGCCGCCACAA
CAGCGCGACTCGCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCGGCTGCTGATTTCGATAGCTTTGATGATGATATTCC
GTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P9GWC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.208

100

0.564
  ssb Glaesserella parasuis strain SC1401

47.09

100

0.473
  ssb Neisseria meningitidis MC58

44.92

99.468

0.447
  ssb Neisseria gonorrhoeae MS11

44.92

99.468

0.447