Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SC192_RS00995 Genome accession   NZ_CP138205
Coordinates   222261..222848 (+) Length   195 a.a.
NCBI ID   WP_348898071.1    Uniprot ID   -
Organism   Acinetobacter sp. 2019-01-05     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 217261..227848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC192_RS00970 (SC192_00970) - 217331..218137 (-) 807 WP_348898064.1 SDR family NAD(P)-dependent oxidoreductase -
  SC192_RS00975 (SC192_00975) - 218241..218612 (-) 372 WP_348898066.1 MerR family transcriptional regulator -
  SC192_RS00980 (SC192_00980) tenA 218678..219352 (-) 675 WP_348898067.1 thiaminase II -
  SC192_RS00985 (SC192_00985) - 219616..220698 (+) 1083 WP_348898068.1 DUF475 domain-containing protein -
  SC192_RS00990 (SC192_00990) - 220845..222209 (+) 1365 WP_348898070.1 MFS transporter -
  SC192_RS00995 (SC192_00995) ssb 222261..222848 (+) 588 WP_348898071.1 single-stranded DNA-binding protein Machinery gene
  SC192_RS01000 (SC192_01000) - 222889..223212 (-) 324 WP_348898072.1 AzlD domain-containing protein -
  SC192_RS01005 (SC192_01005) - 223209..223904 (-) 696 WP_348898073.1 AzlC family ABC transporter permease -
  SC192_RS01010 (SC192_01010) - 223973..224521 (+) 549 WP_072689577.1 helix-turn-helix domain-containing protein -
  SC192_RS01015 (SC192_01015) - 224825..226267 (+) 1443 WP_348898074.1 amino acid permease -
  SC192_RS01020 (SC192_01020) - 226332..227831 (-) 1500 WP_348898075.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21152.96 Da        Isoelectric Point: 6.4822

>NTDB_id=901384 SC192_RS00995 WP_348898071.1 222261..222848(+) (ssb) [Acinetobacter sp. 2019-01-05]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKTSGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNNQGGGYGQNNGGGYGSQG
GFGNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=901384 SC192_RS00995 WP_348898071.1 222261..222848(+) (ssb) [Acinetobacter sp. 2019-01-05]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTAACCCAGTTTTCAATCGCGACAAGTGAAGTTTGGACCGATAAAACGTCAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCATTACGTACGCGTCAGTGGACAGATCAAAATGGTCAAGAACGTTACACGACAGAAATTCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCACCTCAAC
AAGGTGGCGGTTATCAAAATAATAACAACCAAGGTGGCGGCTACGGTCAAAACAATGGCGGTGGTTATGGTAGCCAAGGT
GGTTTCGGTAATGGTGGCAACAGCCCTCAAGGTGGTGGTTTTGCACCTAAAGCACCGCAACAACCAGCGTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.471

100

0.538
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

36.869

100

0.374
  ssb Neisseria gonorrhoeae MS11

36.869

100

0.374