Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RA179_RS08845 Genome accession   NZ_CP138201
Coordinates   1713004..1713903 (+) Length   299 a.a.
NCBI ID   WP_106020694.1    Uniprot ID   -
Organism   Bacillus halotolerans strain DY299     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1708004..1718903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA179_RS08825 (RA179_08825) - 1708673..1710403 (+) 1731 WP_151175022.1 hypothetical protein -
  RA179_RS08830 (RA179_08830) - 1710400..1710681 (+) 282 WP_095713833.1 FlhB-like flagellar biosynthesis protein -
  RA179_RS08835 (RA179_08835) sucC 1710855..1712012 (+) 1158 WP_003238568.1 ADP-forming succinate--CoA ligase subunit beta -
  RA179_RS08840 (RA179_08840) sucD 1712041..1712943 (+) 903 WP_024121388.1 succinate--CoA ligase subunit alpha -
  RA179_RS08845 (RA179_08845) dprA 1713004..1713903 (+) 900 WP_106020694.1 DNA-processing protein DprA Machinery gene
  RA179_RS08850 (RA179_08850) topA 1714094..1716169 (+) 2076 WP_151175023.1 type I DNA topoisomerase -
  RA179_RS08855 (RA179_08855) trmFO 1716245..1717552 (+) 1308 WP_151175024.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RA179_RS08860 (RA179_08860) xerC 1717620..1718534 (+) 915 WP_106020696.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32975.22 Da        Isoelectric Point: 9.3931

>NTDB_id=901337 RA179_RS08845 WP_106020694.1 1713004..1713903(+) (dprA) [Bacillus halotolerans strain DY299]
MDQAAACLITCRINQLLSPSLLLKWWKADPSMSLSNPSCALETASRGKVRAAALKNKIEEQYPKLQHLLSVYQQQGIKVI
PISSDQYPFWLKTIYDPPPVLFAKGDISLLSQGRKIGIVGTRHPTAYGIQVVNHLTIELCHKKWVIVSGLASGIDGLSHA
ASIKAKGRTIGVIAGGFQNIYPRENLQLAEHMAKHHLLLSEHPPETKPQKWHFPMRNRIISGLSEGIIVVQGKEKSGSLI
TAYQALEQGREVFAVPGSVFDPYAGGPIKLIQEGAKAIWSAEDIYAELPEKNVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=901337 RA179_RS08845 WP_106020694.1 1713004..1713903(+) (dprA) [Bacillus halotolerans strain DY299]
TTGGATCAGGCCGCTGCCTGTTTAATCACTTGCAGAATCAACCAATTACTATCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCCGTCAATGTCACTGTCAAATCCTTCATGTGCATTAGAAACAGCTTCACGCGGCAAAGTAAGGGCTGCGGCAC
TAAAAAATAAAATAGAAGAACAATATCCAAAACTTCAGCATTTACTCTCTGTATATCAACAGCAAGGCATTAAAGTCATC
CCAATATCCTCAGATCAATATCCATTCTGGCTGAAAACCATTTATGATCCGCCTCCCGTGCTGTTTGCAAAAGGTGATAT
ATCCCTTCTTTCTCAAGGGAGAAAAATAGGAATTGTAGGTACGAGACATCCGACAGCCTATGGAATCCAGGTTGTCAATC
ATCTTACAATAGAGCTTTGCCATAAAAAGTGGGTGATTGTCAGCGGGCTAGCGTCTGGGATTGACGGATTGTCCCATGCT
GCAAGTATTAAGGCGAAGGGGCGGACAATCGGAGTCATCGCAGGCGGATTTCAGAACATTTATCCTCGAGAAAATCTTCA
ATTAGCAGAACACATGGCTAAACACCATCTTCTTCTGTCAGAGCATCCACCTGAAACCAAACCCCAAAAATGGCATTTCC
CTATGAGAAACCGTATCATCAGCGGGTTAAGTGAGGGCATTATTGTTGTGCAGGGCAAAGAAAAAAGCGGTTCTTTGATT
ACCGCATACCAAGCGCTGGAACAAGGGAGAGAAGTATTTGCCGTACCCGGTTCTGTATTTGATCCTTACGCCGGAGGTCC
TATAAAATTGATTCAAGAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTATGCAGAGCTTCCGGAGAAAAACGTTC
AATATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

83.612

100

0.836