Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   RA179_RS10605 Genome accession   NZ_CP138201
Coordinates   2130231..2131361 (+) Length   376 a.a.
NCBI ID   WP_101863240.1    Uniprot ID   -
Organism   Bacillus halotolerans strain DY299     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2121996..2137817 2130231..2131361 within 0


Gene organization within MGE regions


Location: 2121996..2137817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA179_RS10525 (RA179_10525) - 2121996..2122733 (-) 738 WP_106022520.1 hypothetical protein -
  RA179_RS10530 (RA179_10530) - 2122821..2123753 (-) 933 WP_244637169.1 DUF5677 domain-containing protein -
  RA179_RS10535 (RA179_10535) - 2123968..2124132 (-) 165 WP_151175084.1 hypothetical protein -
  RA179_RS10540 (RA179_10540) - 2124185..2124553 (-) 369 WP_106022517.1 hypothetical protein -
  RA179_RS10545 (RA179_10545) - 2125097..2125313 (-) 217 Protein_2022 hypothetical protein -
  RA179_RS10550 (RA179_10550) - 2125317..2125568 (-) 252 Protein_2023 hypothetical protein -
  RA179_RS10555 (RA179_10555) - 2125639..2125818 (+) 180 WP_106022516.1 hypothetical protein -
  RA179_RS10560 (RA179_10560) - 2125906..2126529 (-) 624 WP_024571441.1 hypothetical protein -
  RA179_RS10565 (RA179_10565) - 2127031..2127261 (+) 231 WP_127696872.1 hypothetical protein -
  RA179_RS10570 (RA179_10570) - 2127269..2127328 (-) 60 WP_255004945.1 hypothetical protein -
  RA179_RS10575 (RA179_10575) - 2127444..2127590 (-) 147 WP_316961074.1 UPF0715 family protein -
  RA179_RS10580 (RA179_10580) - 2127901..2128064 (-) 164 Protein_2029 hypothetical protein -
  RA179_RS10585 (RA179_10585) - 2128413..2128793 (-) 381 WP_318751874.1 hypothetical protein -
  RA179_RS10590 (RA179_10590) - 2128887..2129120 (-) 234 WP_106021718.1 hypothetical protein -
  RA179_RS10595 (RA179_10595) - 2129468..2129728 (+) 261 WP_081638323.1 hypothetical protein -
  RA179_RS10600 (RA179_10600) - 2129976..2130146 (+) 171 WP_240312863.1 hypothetical protein -
  RA179_RS10605 (RA179_10605) rapC 2130231..2131361 (+) 1131 WP_101863240.1 tetratricopeptide repeat protein Regulator
  RA179_RS10610 (RA179_10610) - 2131351..2131494 (+) 144 WP_024121692.1 hypothetical protein -
  RA179_RS10615 (RA179_10615) - 2131534..2131880 (-) 347 Protein_2036 UV damage repair protein UvrX -
  RA179_RS10620 (RA179_10620) ppsA 2132175..2134778 (-) 2604 WP_127696869.1 phosphoenolpyruvate synthase -
  RA179_RS10625 (RA179_10625) - 2135289..2135373 (+) 85 Protein_2038 putative holin-like toxin -
  RA179_RS10630 (RA179_10630) - 2136033..2137172 (-) 1140 WP_318751875.1 tyrosine-type recombinase/integrase -
  RA179_RS10635 (RA179_10635) - 2137398..2137817 (-) 420 WP_286109021.1 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44304.11 Da        Isoelectric Point: 6.1971

>NTDB_id=901341 RA179_RS10605 WP_101863240.1 2130231..2131361(+) (rapC) [Bacillus halotolerans strain DY299]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEARPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYINAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYERDKSDLLPHTLFTLTQIHFKMKDIEKALVLYKKGIEKAKAINDDVLIAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=901341 RA179_RS10605 WP_101863240.1 2130231..2131361(+) (rapC) [Bacillus halotolerans strain DY299]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGCTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGCACGTCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGCCAAACAAAGCTTAAAGGTGTCCTGGAATACTACTGCAATTTCTTTAGAGGAAT
GTATGAATTTGATAAGAAGGATTATATAAATGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ATGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCCCTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCCCATCTTCAGAGAGCCCTAAAAGACTCAAAAGCCATAA
ACAAACACAAACTAATTGGTGCATCATTATATAATTTGGGAAACTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCATTGTATGAAAGAGATAAAAGCGATCTCCTCCCTCACACGTTATTTACGCTGACACA
AATTCACTTTAAAATGAAGGATATTGAAAAAGCCTTGGTTCTTTACAAAAAAGGAATCGAGAAAGCAAAAGCAATAAATG
ACGATGTCTTAATTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTTATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(221-287)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

44.855

100

0.452