Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RA179_RS08875 Genome accession   NZ_CP138201
Coordinates   1720551..1721330 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus halotolerans strain DY299     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1715551..1726330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA179_RS08855 (RA179_08855) trmFO 1716245..1717552 (+) 1308 WP_151175024.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RA179_RS08860 (RA179_08860) xerC 1717620..1718534 (+) 915 WP_106020696.1 tyrosine recombinase XerC -
  RA179_RS08865 (RA179_08865) clpQ 1718547..1719092 (+) 546 WP_014663962.1 ATP-dependent protease subunit ClpQ -
  RA179_RS08870 (RA179_08870) hslU 1719100..1720512 (+) 1413 WP_255004726.1 HslU--HslV peptidase ATPase subunit -
  RA179_RS08875 (RA179_08875) codY 1720551..1721330 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RA179_RS08880 (RA179_08880) flgB 1721710..1722099 (+) 390 WP_010334244.1 flagellar basal body rod protein FlgB -
  RA179_RS08885 (RA179_08885) flgC 1722099..1722551 (+) 453 WP_044155899.1 flagellar basal body rod protein FlgC -
  RA179_RS08890 (RA179_08890) fliE 1722562..1722882 (+) 321 WP_024121395.1 flagellar hook-basal body complex protein FliE -
  RA179_RS08895 (RA179_08895) fliF 1722928..1724538 (+) 1611 WP_024121396.1 flagellar basal-body MS-ring/collar protein FliF -
  RA179_RS08900 (RA179_08900) fliG 1724551..1725567 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  RA179_RS08905 (RA179_08905) fliH 1725560..1726312 (+) 753 WP_106020699.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=901338 RA179_RS08875 WP_003220850.1 1720551..1721330(+) (codY) [Bacillus halotolerans strain DY299]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=901338 RA179_RS08875 WP_003220850.1 1720551..1721330(+) (codY) [Bacillus halotolerans strain DY299]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTTAACTTTAAAGAAAT
GGCGGAAACGCTTCGGGATGTAATTGATTCCAATATTTTCGTTGTGAGCCGCAGAGGAAAACTGCTCGGCTACTCTATCA
ACCAGCAAATTGAAAATGACCGTATGAAAAAAATGCTTGAAGATCGCCAATTCCCAGAGGAATATACGAAGAATCTGTTC
AACGTCCCTGAAACATCTTCTAACCTGGATATCAACAGTGAGTATACTGCTTTCCCTGTTGAAAACAGAGACTTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGAGAAAGATTAGGTACACTCATTCTTTCACGTTTACAGGATC
AATTTAATGATGATGATTTAATACTTGCTGAATACGGCGCTACAGTTGTCGGAATGGAAATTCTGAGAGAAAAAGCAGAA
GAAATTGAAGAAGAAGCAAGAAGCAAAGCAGTAGTACAAATGGCAATCAGCTCTCTTTCTTATAGTGAGCTTGAAGCAAT
TGAACACATCTTTGAAGAGCTTGACGGAAACGAAGGTCTCCTTGTTGCAAGTAAGATTGCAGACCGTGTCGGCATTACCC
GCTCAGTTATTGTTAACGCACTCAGAAAGCTTGAAAGCGCCGGTGTAATTGAGTCAAGATCATTAGGAATGAAGGGTACT
TATATTAAAGTGCTCAACAACAAATTCCTGATTGAATTAGAAAATCTGAAATCCCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467