Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   RA179_RS12395 Genome accession   NZ_CP138201
Coordinates   2443145..2443948 (-) Length   267 a.a.
NCBI ID   WP_010334880.1    Uniprot ID   A0A9Q4HNW6
Organism   Bacillus halotolerans strain DY299     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2438145..2448948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA179_RS12370 (RA179_12370) - 2439145..2439888 (-) 744 WP_127696781.1 glycerophosphodiester phosphodiesterase -
  RA179_RS12375 (RA179_12375) - 2439978..2440598 (-) 621 WP_083244528.1 N-acetylmuramoyl-L-alanine amidase -
  RA179_RS12380 (RA179_12380) - 2440621..2440911 (-) 291 WP_106022156.1 hypothetical protein -
  RA179_RS12385 (RA179_12385) - 2441240..2441374 (+) 135 WP_024122000.1 hypothetical protein -
  RA179_RS12390 (RA179_12390) - 2441447..2442565 (+) 1119 WP_127696780.1 NADH-dependent flavin oxidoreductase -
  RA179_RS12395 (RA179_12395) spo0A 2443145..2443948 (-) 804 WP_010334880.1 sporulation transcription factor Spo0A Regulator
  RA179_RS12400 (RA179_12400) spoIVB 2444224..2445501 (-) 1278 WP_024122004.1 SpoIVB peptidase -
  RA179_RS12405 (RA179_12405) recN 2445676..2447406 (-) 1731 WP_069487198.1 DNA repair protein RecN Machinery gene
  RA179_RS12410 (RA179_12410) argR 2447442..2447891 (-) 450 WP_010334883.1 arginine repressor ArgR -
  RA179_RS12415 (RA179_12415) - 2447988..2448833 (-) 846 WP_127696779.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29719.20 Da        Isoelectric Point: 6.3913

>NTDB_id=901343 RA179_RS12395 WP_010334880.1 2443145..2443948(-) (spo0A) [Bacillus halotolerans strain DY299]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKRKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=901343 RA179_RS12395 WP_010334880.1 2443145..2443948(-) (spo0A) [Bacillus halotolerans strain DY299]
GTGGAGAAAATTAAAGTTTGTGTTGCCGACGATAATCGAGAGCTGGTAAGCCTGTTGAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTCATCGGAGTTGCGTATAACGGACAGGAATGCCTGTCGCTATTTAAAGAAAAAGATCCGGATGTGCTCG
TCTTGGATATTATTATGCCGCATTTGGACGGACTTGCTGTTTTAGAGCGACTGAGAGAATCCGATCTGAAAAAACAGCCA
AACGTCATCATGCTGACAGCCTTCGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGAGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATTCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGCGCGC
CGTCATCACAAAGCAGCATTATACGCAGCAGCCAGCCTGAACCAAAAAGGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCTGCACATATTAAAGGCTATCTCTATCTGCGTGAAGCGATCTCAATGGTGTACAACGACAT
CGAACTGCTCGGCAGTATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCTAGCCGTGTAGAAA
GAGCGATCCGCCACGCGATTGAAGTGGCATGGAGCAGAGGGAATATTGATTCCATTTCCTCATTGTTCGGCTATACAGTC
AGCATGACGAAGGCAAAACCTACAAATTCAGAGTTCATTGCGATGGTTGCGGATAAGCTGAGATTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

99.625

100

0.996