Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SB028_RS17660 Genome accession   NZ_CP137920
Coordinates   3753635..3754162 (+) Length   175 a.a.
NCBI ID   WP_069368328.1    Uniprot ID   -
Organism   Proteus vulgaris strain 2023JQ-00005     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3748635..3759162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SB028_RS17655 (SB028_17655) uvrA 3750548..3753382 (-) 2835 WP_069368327.1 excinuclease ABC subunit UvrA -
  SB028_RS17660 (SB028_17660) ssb 3753635..3754162 (+) 528 WP_069368328.1 single-stranded DNA-binding protein SSB1 Machinery gene
  SB028_RS17665 (SB028_17665) zur 3754480..3755010 (+) 531 WP_069368329.1 zinc uptake transcriptional repressor Zur -
  SB028_RS17670 (SB028_17670) - 3755034..3755266 (-) 233 Protein_3448 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  SB028_RS17675 (SB028_17675) lexA 3755429..3756040 (-) 612 WP_069368330.1 transcriptional repressor LexA -
  SB028_RS17680 (SB028_17680) - 3756168..3756539 (-) 372 WP_006536373.1 diacylglycerol kinase -
  SB028_RS17685 (SB028_17685) plsB 3756670..3759153 (+) 2484 WP_069368331.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18860.93 Da        Isoelectric Point: 4.9468

>NTDB_id=901280 SB028_RS17660 WP_069368328.1 3753635..3754162(+) (ssb) [Proteus vulgaris strain 2023JQ-00005]
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNIGGTMQMLGGRGGQDSAPSQGGQGGWGQPQQPQASQQFSGGAPSRPAQQPAAAPA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=901280 SB028_RS17660 WP_069368328.1 3753635..3754162(+) (ssb) [Proteus vulgaris strain 2023JQ-00005]
ATGGCGAGCAGAGGCGTAAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCAGAAATCCGTTATATGCCAAGTGG
CGGTGCAGTTGCTAACCTAACACTGGCAACTTCAGAAAGCTGGCGCGATAAACAAACCGGTGAAATGAAAGAAAAAACCG
AGTGGCACCGTGTGGTAATTTTCGGCAAGTTAGCGGAAATTGCAGGCGAATATCTGCGTAAAGGTTCACAAGTGTATATC
GAAGGTCAATTACAAACACGTAAATGGCAAGACCAAAGCGGTCAAGACAGATATAGCACTGAAGTTGTTGTTAACATTGG
CGGCACAATGCAGATGTTAGGTGGCCGTGGTGGTCAAGATAGCGCGCCTTCACAAGGTGGTCAAGGCGGTTGGGGGCAAC
CACAACAGCCACAAGCATCACAACAATTTAGCGGTGGTGCACCATCTCGTCCAGCACAACAACCTGCAGCAGCACCCGCA
CCAAGTAATGAACCACCAATGGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.432

100

0.766
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.6
  ssb Neisseria meningitidis MC58

48.603

100

0.497
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.497