Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   SBP02_RS16765 Genome accession   NZ_CP137892
Coordinates   3629415..3630752 (+) Length   445 a.a.
NCBI ID   WP_318643476.1    Uniprot ID   -
Organism   Pseudomonas benzenivorans strain HNIBRBA3361     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3624415..3635752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBP02_RS16745 (SBP02_16745) - 3624721..3625713 (+) 993 WP_318643468.1 outer membrane protein assembly factor BamD -
  SBP02_RS16750 (SBP02_16750) - 3625783..3627414 (-) 1632 WP_318643470.1 NAD+ synthase -
  SBP02_RS16755 (SBP02_16755) - 3627594..3627830 (+) 237 WP_318643472.1 PP0621 family protein -
  SBP02_RS16760 (SBP02_16760) pilS 3627820..3629412 (+) 1593 WP_318643474.1 ATP-binding protein Regulator
  SBP02_RS16765 (SBP02_16765) pilR 3629415..3630752 (+) 1338 WP_318643476.1 sigma-54 dependent transcriptional regulator Regulator
  SBP02_RS16770 (SBP02_16770) thiO 3630782..3631891 (-) 1110 WP_318643478.1 glycine oxidase ThiO -
  SBP02_RS16775 (SBP02_16775) - 3631950..3632465 (+) 516 WP_318643480.1 GspH/FimT family pseudopilin -
  SBP02_RS16780 (SBP02_16780) - 3632565..3633020 (+) 456 WP_318643482.1 GspH/FimT family pseudopilin -
  SBP02_RS16785 (SBP02_16785) pilV 3633023..3633529 (+) 507 WP_318643483.1 type IV pilus modification protein PilV -
  SBP02_RS16790 (SBP02_16790) - 3633526..3634119 (+) 594 WP_318643485.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  SBP02_RS16795 (SBP02_16795) - 3634116..3634559 (+) 444 WP_318643486.1 pilus assembly PilX N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49827.10 Da        Isoelectric Point: 5.4584

>NTDB_id=901249 SBP02_RS16765 WP_318643476.1 3629415..3630752(+) (pilR) [Pseudomonas benzenivorans strain HNIBRBA3361]
MNRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARDWLAKEPFDLCLTDMRLPDGTGLELVQYIQQRHPQVPVAM
ITAYGSLDTAINALKAGAFDFLTKPVDLGRLRELVATALRLRTTEGENTPVDSRLLGDSPPMQTLRKQILKLARSQAPVY
ISGESGSGKELVARLIHEQGPRSEQPFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEAVVDVRILCATHKDLAAEVAAERFRQDLYYRLNVIELRVPPLRERREDIAQLATAM
LKRLAADTGLSLAQLETEALEKLKSYRFPGNVRELENMLERAYTLCEDDRISASDLRLSDACSPGENGEASLAQIDNLED
HLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=901249 SBP02_RS16765 WP_318643476.1 3629415..3630752(+) (pilR) [Pseudomonas benzenivorans strain HNIBRBA3361]
ATGAACCGCCAGAGAGCCCTGATCGTCGATGACGAGCCCGATATCCGCGAACTGCTGGAGATCACCCTAGGCCGGATGAA
GCTCGACACCCGCAGCGCCCGCAACGTCAAGGAGGCGCGCGACTGGCTGGCCAAGGAGCCGTTCGATCTGTGCCTGACCG
ACATGCGCCTGCCCGACGGCACCGGGCTGGAGCTGGTGCAATACATCCAACAGCGCCACCCGCAGGTACCGGTGGCGATG
ATCACCGCCTACGGCAGCCTGGACACCGCGATCAACGCGCTCAAGGCCGGGGCCTTCGACTTCCTGACCAAGCCGGTGGA
CCTGGGCCGCCTGCGCGAGCTGGTCGCCACGGCCCTGCGCCTGCGCACCACCGAGGGCGAAAACACGCCGGTGGACAGCC
GCCTGCTCGGCGACTCGCCGCCCATGCAGACACTGCGCAAACAGATCCTCAAACTCGCCCGCAGTCAGGCGCCGGTGTAT
ATCAGCGGCGAGTCCGGCAGCGGCAAGGAGCTGGTCGCCCGCCTGATCCACGAACAGGGACCACGCAGCGAGCAGCCCTT
CGTTCCGGTCAACTGCGGCGCCATTCCCTCGGAACTGATGGAGAGCGAGTTCTTCGGGCACAAGAAAGGCAGCTTCACCG
GCGCCGTGGAGGACAAGCAGGGGCTGTTCCAGGCCGCCAACGGCGGCACCCTGTTCCTCGACGAGGTCGCCGACCTGCCG
CTGCCGATGCAGGTCAAGCTGCTGCGGGCGATCCAGGAGAAGGCCGTGCGCGCGGTCGGTGGCCAGCAGGAGGCGGTGGT
CGATGTGCGCATCCTCTGCGCCACCCACAAGGACCTGGCCGCGGAAGTGGCCGCCGAACGCTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTACGCGTGCCGCCACTACGCGAGCGCCGCGAAGACATCGCCCAGCTGGCCACGGCCATG
CTCAAGCGCCTGGCCGCAGACACCGGCCTGAGCCTCGCCCAACTCGAGACCGAGGCCCTGGAGAAGCTCAAGAGCTACCG
CTTCCCCGGCAACGTGCGCGAGCTGGAGAACATGCTCGAGCGCGCCTACACCCTGTGCGAGGACGACCGCATCAGCGCCA
GCGACCTGCGCCTGAGCGATGCCTGCAGCCCCGGTGAGAACGGCGAGGCCAGCCTGGCGCAAATCGACAACCTGGAAGAC
CACCTGGAAGACATCGAGCGCAAGCTGATCATGCAGGCACTCGAAGAAACCCGCTGGAACCGCACCGCCGCCGCCCAGCG
CCTGGGCCTGACCTTTCGCTCGATGCGCTACCGCCTGAAGAAGCTGGGGATCGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

86.742

100

0.867
  pilR Acinetobacter baumannii strain A118

50.109

100

0.517
  luxO Vibrio cholerae strain A1552

37.978

100

0.38