Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   SBP02_RS16760 Genome accession   NZ_CP137892
Coordinates   3627820..3629412 (+) Length   530 a.a.
NCBI ID   WP_318643474.1    Uniprot ID   -
Organism   Pseudomonas benzenivorans strain HNIBRBA3361     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3622820..3634412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBP02_RS16735 (SBP02_16735) pgeF 3622865..3623602 (-) 738 WP_318643464.1 peptidoglycan editing factor PgeF -
  SBP02_RS16740 (SBP02_16740) rluD 3623599..3624573 (-) 975 WP_318643466.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  SBP02_RS16745 (SBP02_16745) - 3624721..3625713 (+) 993 WP_318643468.1 outer membrane protein assembly factor BamD -
  SBP02_RS16750 (SBP02_16750) - 3625783..3627414 (-) 1632 WP_318643470.1 NAD+ synthase -
  SBP02_RS16755 (SBP02_16755) - 3627594..3627830 (+) 237 WP_318643472.1 PP0621 family protein -
  SBP02_RS16760 (SBP02_16760) pilS 3627820..3629412 (+) 1593 WP_318643474.1 ATP-binding protein Regulator
  SBP02_RS16765 (SBP02_16765) pilR 3629415..3630752 (+) 1338 WP_318643476.1 sigma-54 dependent transcriptional regulator Regulator
  SBP02_RS16770 (SBP02_16770) thiO 3630782..3631891 (-) 1110 WP_318643478.1 glycine oxidase ThiO -
  SBP02_RS16775 (SBP02_16775) - 3631950..3632465 (+) 516 WP_318643480.1 GspH/FimT family pseudopilin -
  SBP02_RS16780 (SBP02_16780) - 3632565..3633020 (+) 456 WP_318643482.1 GspH/FimT family pseudopilin -
  SBP02_RS16785 (SBP02_16785) pilV 3633023..3633529 (+) 507 WP_318643483.1 type IV pilus modification protein PilV -
  SBP02_RS16790 (SBP02_16790) - 3633526..3634119 (+) 594 WP_318643485.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58427.67 Da        Isoelectric Point: 8.3568

>NTDB_id=901248 SBP02_RS16760 WP_318643474.1 3627820..3629412(+) (pilS) [Pseudomonas benzenivorans strain HNIBRBA3361]
MNAESLPLGGVQGRRILRLYHLYRLAIGLVLVLLISSDLDSELLDLAHPGLFRNGSWFYLILNTLVAVMVQRPRSLIQVF
SLALVDVILLSGLFYAAGGTPSGIGTLLIVAVAIANIMLRGRIGLLIAAVAAIGLIYLTFYLSLSRPAAAAQYVQVGALG
ALCFAAALFVQGITKRLHASESLAEQRAADVASLEALNALILQRMRTGILVLDDQHRVLLANQGALTLLGCEALAGKILD
PHCPELVKRLQHWQDNPTLRPANLQALVDGPVLQPSFIPLQRGEQRETLVFLDDISQIAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLQESEDLQGPDQRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRSSASPD
KTLHVETQAGTIQTRMDPHQLTQVLTNLVQNGLRYSARQHRQGQVWLKLFRDPASELPVLEVLDDGAGVPAEQLHHIFEP
FYTTENKGTGLGLYISRELCESNQARLDYKSREGGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=901248 SBP02_RS16760 WP_318643474.1 3627820..3629412(+) (pilS) [Pseudomonas benzenivorans strain HNIBRBA3361]
GTGAACGCTGAGTCCCTCCCTCTCGGCGGGGTCCAGGGCCGACGCATCCTGCGGCTCTATCACCTGTATCGCCTGGCCAT
CGGCCTGGTACTGGTGCTGCTGATCTCCAGCGACCTGGACAGCGAGCTGCTGGACCTGGCCCACCCGGGCCTGTTCCGCA
ATGGCAGCTGGTTCTACCTGATCCTGAATACCCTGGTGGCGGTGATGGTGCAGCGACCACGCAGCCTGATCCAGGTGTTC
AGCCTGGCCCTGGTCGATGTGATCCTGCTGTCCGGCCTGTTCTATGCCGCCGGCGGCACCCCCAGCGGCATCGGCACGCT
GCTGATCGTCGCGGTGGCCATCGCCAATATCATGCTGCGCGGGCGCATCGGCCTGCTGATCGCCGCCGTCGCCGCCATCG
GCCTGATCTACCTGACCTTCTACCTCAGCCTCAGCCGGCCGGCGGCAGCCGCCCAGTACGTGCAGGTTGGCGCCCTCGGC
GCGCTGTGCTTCGCCGCCGCCCTGTTCGTCCAGGGCATCACCAAGCGCCTGCACGCCAGCGAAAGCCTGGCCGAGCAGCG
CGCCGCCGACGTCGCCAGCCTCGAAGCCCTCAACGCCCTGATCCTGCAACGCATGCGCACCGGCATCCTGGTACTGGATG
ACCAGCACCGGGTGCTCCTGGCCAACCAGGGTGCCTTGACCCTGCTCGGCTGCGAGGCCCTGGCCGGCAAGATACTCGAC
CCGCACTGCCCGGAGCTGGTCAAGCGCCTGCAACACTGGCAGGACAACCCGACCCTGCGCCCGGCCAACCTGCAGGCCCT
GGTCGATGGCCCGGTGCTGCAGCCCAGTTTCATTCCCCTGCAGCGCGGCGAGCAACGCGAGACCCTGGTGTTCCTCGACG
ACATCTCCCAGATCGCGCAACAGGCGCAACAGCTCAAGCTCGCCTCCCTGGGCCGGCTGACCGCGGGTATCGCCCATGAG
ATCCGCAACCCGCTCGGCGCGATCAGCCACGCCGCGCAGCTGCTGCAGGAATCGGAAGACCTGCAGGGCCCGGACCAGCG
CCTGGCGCAGATCATCCAGGACCACTCGCGGCGGATGAACCTGGTGATCGAGAACGTCCTGCAGCTGTCGCGCCGGCGCC
AGGCCGAGCCCCAGCTGCTCGACCTCAAATACTGGCTGCACCGCTTCGCCAGCGAGTTCCGCAGCTCGGCTTCGCCCGAC
AAGACGCTGCACGTGGAGACCCAGGCCGGCACCATTCAGACCCGCATGGACCCGCACCAGCTGACCCAGGTACTGACCAA
CCTGGTGCAAAACGGCCTGCGCTACAGCGCCCGCCAGCACCGCCAGGGGCAGGTCTGGCTCAAGCTGTTCCGCGACCCGG
CCAGCGAGCTGCCGGTGCTCGAGGTGCTGGACGACGGAGCGGGCGTGCCGGCCGAGCAACTGCATCACATCTTCGAGCCC
TTCTACACCACCGAGAACAAGGGCACCGGCCTGGGCCTGTATATTTCCCGCGAGCTGTGCGAAAGCAACCAGGCCCGCCT
CGACTACAAATCCCGCGAGGGCGGCGGCAGCTGCTTTCGCATCACCTTTGCCCACCCGCGCAAGCTGAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

67.358

100

0.674