Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   SBK94_RS17420 Genome accession   NZ_CP137889
Coordinates   3491263..3491952 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain N23     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3486263..3496952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBK94_RS17385 (SBK94_17385) - 3486461..3486943 (-) 483 WP_003151394.1 flagellar protein FlgN -
  SBK94_RS17390 (SBK94_17390) flgM 3486958..3487224 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  SBK94_RS17395 (SBK94_17395) - 3487294..3487713 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  SBK94_RS17400 (SBK94_17400) comFC 3487787..3488476 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  SBK94_RS17405 (SBK94_17405) - 3488482..3488766 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  SBK94_RS17410 (SBK94_17410) comFA 3488824..3490209 (-) 1386 WP_014305928.1 DEAD/DEAH box helicase Machinery gene
  SBK94_RS17415 (SBK94_17415) - 3490317..3491165 (-) 849 WP_014305929.1 DegV family protein -
  SBK94_RS17420 (SBK94_17420) degU 3491263..3491952 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  SBK94_RS17425 (SBK94_17425) degS 3492029..3493192 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  SBK94_RS17430 (SBK94_17430) - 3493415..3494062 (+) 648 WP_003151384.1 YigZ family protein -
  SBK94_RS17435 (SBK94_17435) - 3494067..3495281 (+) 1215 WP_014305930.1 LCP family protein -
  SBK94_RS17440 (SBK94_17440) - 3495371..3496447 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=901134 SBK94_RS17420 WP_003219701.1 3491263..3491952(-) (degU) [Bacillus velezensis strain N23]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=901134 SBK94_RS17420 WP_003219701.1 3491263..3491952(-) (degU) [Bacillus velezensis strain N23]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1