Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   SBK94_RS17410 Genome accession   NZ_CP137889
Coordinates   3488824..3490209 (-) Length   461 a.a.
NCBI ID   WP_014305928.1    Uniprot ID   -
Organism   Bacillus velezensis strain N23     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3483824..3495209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBK94_RS17375 (SBK94_17375) flgL 3483999..3484916 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  SBK94_RS17380 (SBK94_17380) flgK 3484928..3486445 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  SBK94_RS17385 (SBK94_17385) - 3486461..3486943 (-) 483 WP_003151394.1 flagellar protein FlgN -
  SBK94_RS17390 (SBK94_17390) flgM 3486958..3487224 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  SBK94_RS17395 (SBK94_17395) - 3487294..3487713 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  SBK94_RS17400 (SBK94_17400) comFC 3487787..3488476 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  SBK94_RS17405 (SBK94_17405) - 3488482..3488766 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  SBK94_RS17410 (SBK94_17410) comFA 3488824..3490209 (-) 1386 WP_014305928.1 DEAD/DEAH box helicase Machinery gene
  SBK94_RS17415 (SBK94_17415) - 3490317..3491165 (-) 849 WP_014305929.1 DegV family protein -
  SBK94_RS17420 (SBK94_17420) degU 3491263..3491952 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  SBK94_RS17425 (SBK94_17425) degS 3492029..3493192 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  SBK94_RS17430 (SBK94_17430) - 3493415..3494062 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52468.90 Da        Isoelectric Point: 10.1677

>NTDB_id=901133 SBK94_RS17410 WP_014305928.1 3488824..3490209(-) (comFA) [Bacillus velezensis strain N23]
MAEGASEFSEVRDFFYGRHLLRSEIPFSDHRIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENSWEPVKLSWEGTLTDGQKQAAAALTDAIKGRQELLVWAVCGSGKTEMLFPGIEY
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGMTNGMKKAKKHIELMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=901133 SBK94_RS17410 WP_014305928.1 3488824..3490209(-) (comFA) [Bacillus velezensis strain N23]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATCGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGGGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTAT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCTGA
CACATTAAAAAAGAATGCTGAAGCAGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACTTATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.043

99.783

0.629