Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   SBK94_RS17400 Genome accession   NZ_CP137889
Coordinates   3487787..3488476 (-) Length   229 a.a.
NCBI ID   WP_196616643.1    Uniprot ID   -
Organism   Bacillus velezensis strain N23     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3482787..3493476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBK94_RS17365 (SBK94_17365) fliW 3482878..3483309 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  SBK94_RS17370 (SBK94_17370) - 3483339..3483908 (-) 570 WP_024085861.1 DUF6470 family protein -
  SBK94_RS17375 (SBK94_17375) flgL 3483999..3484916 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  SBK94_RS17380 (SBK94_17380) flgK 3484928..3486445 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  SBK94_RS17385 (SBK94_17385) - 3486461..3486943 (-) 483 WP_003151394.1 flagellar protein FlgN -
  SBK94_RS17390 (SBK94_17390) flgM 3486958..3487224 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  SBK94_RS17395 (SBK94_17395) - 3487294..3487713 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  SBK94_RS17400 (SBK94_17400) comFC 3487787..3488476 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  SBK94_RS17405 (SBK94_17405) - 3488482..3488766 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  SBK94_RS17410 (SBK94_17410) comFA 3488824..3490209 (-) 1386 WP_014305928.1 DEAD/DEAH box helicase Machinery gene
  SBK94_RS17415 (SBK94_17415) - 3490317..3491165 (-) 849 WP_014305929.1 DegV family protein -
  SBK94_RS17420 (SBK94_17420) degU 3491263..3491952 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  SBK94_RS17425 (SBK94_17425) degS 3492029..3493192 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25259.95 Da        Isoelectric Point: 8.4880

>NTDB_id=901132 SBK94_RS17400 WP_196616643.1 3487787..3488476(-) (comFC) [Bacillus velezensis strain N23]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=901132 SBK94_RS17400 WP_196616643.1 3487787..3488476(-) (comFC) [Bacillus velezensis strain N23]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603