Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R9Z33_RS19440 Genome accession   NZ_CP137852
Coordinates   4040063..4040584 (-) Length   173 a.a.
NCBI ID   WP_318648213.1    Uniprot ID   -
Organism   Sediminicoccus rosea strain R-30     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4035063..4045584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9Z33_RS19415 (R9Z33_19415) - 4035280..4035894 (-) 615 WP_318648210.1 methyltransferase -
  R9Z33_RS19425 (R9Z33_19425) - 4036082..4036615 (-) 534 WP_318648211.1 peptidylprolyl isomerase -
  R9Z33_RS19430 (R9Z33_19430) coaD 4036689..4037189 (-) 501 WP_318648212.1 pantetheine-phosphate adenylyltransferase -
  R9Z33_RS19435 (R9Z33_19435) gyrA 4037186..4039894 (-) 2709 WP_318651676.1 DNA gyrase subunit A -
  R9Z33_RS19440 (R9Z33_19440) ssb 4040063..4040584 (-) 522 WP_318648213.1 single-stranded DNA-binding protein Machinery gene
  R9Z33_RS19445 (R9Z33_19445) uvrA 4040731..4043658 (+) 2928 WP_318648214.1 excinuclease ABC subunit UvrA -
  R9Z33_RS19450 (R9Z33_19450) - 4043659..4043850 (-) 192 WP_318648215.1 hypothetical protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18699.64 Da        Isoelectric Point: 7.0233

>NTDB_id=900905 R9Z33_RS19440 WP_318648213.1 4040063..4040584(-) (ssb) [Sediminicoccus rosea strain R-30]
MAGVNKVIILGRLGKDPEVRNFQNGGKVVNLRIATSERYKDREGNQQERTEWHAVAIFNEKLGEIAERYLKKGSEVYIEG
QLETRKWQDASGQDKYTTEIVLRQYRGELALVGGRSSGGGGEMAEEGGYSGRSGGGGYSGGGERSSAPARGGAPRSGGWD
AGKKPDMDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=900905 R9Z33_RS19440 WP_318648213.1 4040063..4040584(-) (ssb) [Sediminicoccus rosea strain R-30]
ATGGCCGGTGTGAACAAGGTGATCATCCTGGGCCGCCTCGGCAAGGACCCGGAGGTGCGCAACTTCCAGAATGGCGGCAA
GGTCGTGAATCTGCGGATCGCGACCAGCGAGCGCTACAAGGACCGCGAGGGCAACCAGCAGGAGCGGACCGAGTGGCATG
CCGTCGCCATCTTCAACGAGAAGCTCGGCGAGATCGCCGAGCGCTATCTGAAGAAGGGCAGCGAGGTCTACATCGAGGGC
CAGCTGGAGACCCGGAAGTGGCAGGACGCCTCGGGCCAGGACAAGTACACGACCGAGATCGTCCTGCGGCAGTATCGCGG
CGAGCTGGCGCTGGTTGGCGGCCGTTCCTCGGGTGGTGGCGGCGAGATGGCCGAGGAGGGCGGGTATTCGGGCCGCAGCG
GCGGCGGCGGGTATTCGGGTGGTGGGGAGCGCAGCTCGGCCCCGGCCCGCGGCGGCGCGCCGCGCTCGGGCGGCTGGGAT
GCGGGGAAGAAGCCGGATATGGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.295

100

0.491
  ssb Glaesserella parasuis strain SC1401

43.523

100

0.486
  ssb Neisseria meningitidis MC58

40.437

100

0.428
  ssb Neisseria gonorrhoeae MS11

39.888

100

0.41