Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KYC5002_RS42150 Genome accession   NZ_CP137851
Coordinates   10690426..10690959 (-) Length   177 a.a.
NCBI ID   WP_376757294.1    Uniprot ID   -
Organism   Archangium violaceum strain KYC5002     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 10685426..10695959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYC5002_RS42130 (KYC5002_42010) selB 10685757..10687673 (-) 1917 WP_376757290.1 selenocysteine-specific translation elongation factor -
  KYC5002_RS42135 (KYC5002_42015) - 10687697..10688344 (-) 648 WP_376757291.1 phosphoribosyltransferase -
  KYC5002_RS42140 (KYC5002_42020) - 10688443..10689342 (-) 900 WP_376757292.1 Hsp33 family molecular chaperone HslO -
  KYC5002_RS42145 (KYC5002_42025) - 10689588..10690307 (+) 720 WP_376757293.1 succinate dehydrogenase -
  KYC5002_RS42150 (KYC5002_42030) ssb 10690426..10690959 (-) 534 WP_376757294.1 single-stranded DNA-binding protein Machinery gene
  KYC5002_RS42155 (KYC5002_42035) dacB 10691145..10693382 (-) 2238 WP_376757295.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  KYC5002_RS42160 (KYC5002_42040) - 10693671..10694462 (-) 792 WP_376757296.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18325.95 Da        Isoelectric Point: 5.2866

>NTDB_id=900898 KYC5002_RS42150 WP_376757294.1 10690426..10690959(-) (ssb) [Archangium violaceum strain KYC5002]
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSDTWTDKNGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCYVEG
RLQTREWTDKENRKNYTTEVVANAVTFLGGRDGAGAGSGGGGGGGGRGGGYSQRGGGQQQQQQGGYDDYGPPPVGMDEGG
GGGGGGGGNGGDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=900898 KYC5002_RS42150 WP_376757294.1 10690426..10690959(-) (ssb) [Archangium violaceum strain KYC5002]
ATGGCTGGAGGAGTCAACAAGGTCATCCTCATCGGCAACCTCGGCGCGGATCCGGAGGTGCGTTTCACCCCGGGCGGCCA
GGCGGTCGCCAACTTCCGCATCGCGACCAGCGACACCTGGACGGACAAGAACGGCCAGAAGCAGGAGCGCACGGAGTGGC
ACCGCATCGTCGTGTGGGGGAAGCTCGCGGAGCTCTGCGGCGAGTACCTGAAGAAGGGCCGTCAGTGCTACGTCGAGGGC
CGCCTGCAGACGCGGGAGTGGACCGACAAGGAGAATCGGAAGAACTACACCACCGAGGTGGTGGCCAACGCGGTGACCTT
CCTCGGCGGCCGTGACGGCGCTGGAGCGGGCTCGGGCGGTGGTGGCGGTGGTGGTGGCCGCGGCGGGGGTTACTCGCAGC
GTGGCGGTGGCCAGCAGCAGCAGCAGCAGGGCGGTTACGACGACTACGGTCCGCCCCCCGTGGGCATGGACGAGGGTGGC
GGTGGTGGTGGTGGTGGCGGCGGCAACGGCGGGGACGACGACATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.354

100

0.503
  ssb Glaesserella parasuis strain SC1401

41.27

100

0.441
  ssb Neisseria meningitidis MC58

42.529

98.305

0.418
  ssb Neisseria gonorrhoeae MS11

42.529

98.305

0.418