Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | AABJ99_RS10455 | Genome accession | NZ_AP027764 |
| Coordinates | 2188263..2189273 (+) | Length | 336 a.a. |
| NCBI ID | WP_000568522.1 | Uniprot ID | Q8FGR3 |
| Organism | Escherichia coli strain 2017-02-2CC | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2183263..2194273
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AABJ99_RS10420 (VEE76_19910) | nudB | 2183554..2184006 (+) | 453 | WP_077626310.1 | dihydroneopterin triphosphate diphosphatase | - |
| AABJ99_RS10425 (VEE76_19920) | yebC | 2184035..2184775 (+) | 741 | WP_000907234.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| AABJ99_RS10430 (VEE76_19930) | ruvC | 2184810..2185331 (+) | 522 | WP_001295503.1 | crossover junction endodeoxyribonuclease RuvC | - |
| AABJ99_RS10435 (VEE76_19940) | - | 2185333..2185896 (-) | 564 | WP_322281606.1 | YebB family permuted papain-like enzyme | - |
| AABJ99_RS10440 (VEE76_19950) | - | 2185804..2186853 (+) | 1050 | WP_338387578.1 | hypothetical protein | - |
| AABJ99_RS10445 (VEE76_19960) | - | 2186891..2187475 (+) | 585 | WP_338387555.1 | hypothetical protein | - |
| AABJ99_RS10450 (VEE76_19970) | ruvA | 2187643..2188254 (+) | 612 | WP_039020721.1 | Holliday junction branch migration protein RuvA | - |
| AABJ99_RS10455 (VEE76_19980) | ruvB | 2188263..2189273 (+) | 1011 | WP_000568522.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| AABJ99_RS10460 (VEE76_19990) | znuB | 2189420..2190205 (-) | 786 | WP_000571478.1 | zinc ABC transporter permease subunit ZnuB | - |
| AABJ99_RS10465 (VEE76_20000) | znuC | 2190202..2190957 (-) | 756 | WP_039020722.1 | zinc ABC transporter ATP-binding protein ZnuC | - |
| AABJ99_RS10470 (VEE76_20010) | znuA | 2191036..2191968 (+) | 933 | WP_011076428.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| AABJ99_RS10475 (VEE76_20020) | mepM | 2191984..2193306 (+) | 1323 | WP_001184021.1 | murein DD-endopeptidase MepM | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37171.80 Da Isoelectric Point: 4.7818
>NTDB_id=90073 AABJ99_RS10455 WP_000568522.1 2188263..2189273(+) (ruvB) [Escherichia coli strain 2017-02-2CC]
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TVRAWNHFGITPPEMP
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TVRAWNHFGITPPEMP
Nucleotide
Download Length: 1011 bp
>NTDB_id=90073 AABJ99_RS10455 WP_000568522.1 2188263..2189273(+) (ruvB) [Escherichia coli strain 2017-02-2CC]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTGGCAGATCGCGCCATTCGCCCCAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCACAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATCTGTTGATTTTTGGTCCTCCGGGTTTAGGTAAAACTACGCTTGCCAACATTGTCGCCAATGAAATGGGC
GTGAATTTACGCACGACTTCCGGTCCAGTACTGGAAAAGGCGGGCGATCTGGCAGCGATGCTCACTAACCTTGAACCGCA
TGACGTGCTGTTTATTGATGAGATCCACCGTCTTTCACCAGTGGTGGAAGAGGTGTTGTATCCGGCAATGGAAGACTACC
AACTGGATATTATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGACTTGCCGCCGTTTACTCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGCTGCGTGATCGTTTTGGTATTGTGCAACGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATTGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGACGATGGCGCGTTGGAAGTTGCTC
GTCGCGCTCGCGGTACTCCACGTATTGCCAACCGTCTGCTGCGTCGAGTGCGTGACTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCGGATATCGCTGCTCAGGCGCTGGATATGCTGAATGTCGATGCCGAAGGTTTCGATTATATGGACCGCAA
ATTGTTGCTGGCGGTAATCGATAAGTTCTTTGGTGGGCCGGTAGGTCTGGATAACCTGGCGGCTGCCATTGGCGAAGAGC
GTGAAACCATTGAGGATGTGCTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGCGGGCGTATGGCG
ACAGTGCGGGCGTGGAACCACTTCGGCATCACGCCACCAGAAATGCCTTAA
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTGGCAGATCGCGCCATTCGCCCCAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCACAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATCTGTTGATTTTTGGTCCTCCGGGTTTAGGTAAAACTACGCTTGCCAACATTGTCGCCAATGAAATGGGC
GTGAATTTACGCACGACTTCCGGTCCAGTACTGGAAAAGGCGGGCGATCTGGCAGCGATGCTCACTAACCTTGAACCGCA
TGACGTGCTGTTTATTGATGAGATCCACCGTCTTTCACCAGTGGTGGAAGAGGTGTTGTATCCGGCAATGGAAGACTACC
AACTGGATATTATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGACTTGCCGCCGTTTACTCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGCTGCGTGATCGTTTTGGTATTGTGCAACGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATTGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGACGATGGCGCGTTGGAAGTTGCTC
GTCGCGCTCGCGGTACTCCACGTATTGCCAACCGTCTGCTGCGTCGAGTGCGTGACTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCGGATATCGCTGCTCAGGCGCTGGATATGCTGAATGTCGATGCCGAAGGTTTCGATTATATGGACCGCAA
ATTGTTGCTGGCGGTAATCGATAAGTTCTTTGGTGGGCCGGTAGGTCTGGATAACCTGGCGGCTGCCATTGGCGAAGAGC
GTGAAACCATTGAGGATGTGCTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGCGGGCGTATGGCG
ACAGTGCGGGCGTGGAACCACTTCGGCATCACGCCACCAGAAATGCCTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
60.486 |
97.917 |
0.592 |
| ruvB | Streptococcus pneumoniae TIGR4 |
58.934 |
94.94 |
0.56 |
| ruvB | Streptococcus pneumoniae R6 |
58.934 |
94.94 |
0.56 |
| ruvB | Streptococcus pneumoniae D39 |
58.934 |
94.94 |
0.56 |
| ruvB | Synechocystis sp. PCC 6803 |
52.941 |
96.131 |
0.509 |
| ruvB | Helicobacter pylori 26695 |
52.366 |
94.345 |
0.494 |