Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R2H34_RS15600 Genome accession   NZ_CP137746
Coordinates   3210999..3211583 (-) Length   194 a.a.
NCBI ID   WP_004909838.1    Uniprot ID   A0A8I0V5Q1
Organism   Acinetobacter sp. 16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3205999..3216583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2H34_RS15585 gabT 3206031..3207323 (-) 1293 WP_004964859.1 4-aminobutyrate--2-oxoglutarate transaminase -
  R2H34_RS15590 - 3207478..3208977 (+) 1500 WP_318342345.1 PLP-dependent aminotransferase family protein -
  R2H34_RS15595 - 3209050..3210492 (-) 1443 WP_005403379.1 amino acid permease -
  R2H34_RS15600 ssb 3210999..3211583 (-) 585 WP_004909838.1 single-stranded DNA-binding protein Machinery gene
  R2H34_RS15605 - 3211636..3213000 (-) 1365 WP_005403380.1 MFS transporter -
  R2H34_RS15610 - 3213195..3214349 (+) 1155 WP_108565295.1 IS4 family transposase -
  R2H34_RS15615 - 3214418..3215500 (-) 1083 WP_125298055.1 DUF475 domain-containing protein -
  R2H34_RS15620 tenA 3215675..3216349 (+) 675 WP_004951380.1 thiaminase II -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21241.96 Da        Isoelectric Point: 6.7308

>NTDB_id=900521 R2H34_RS15600 WP_004909838.1 3210999..3211583(-) (ssb) [Acinetobacter sp. 16]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDSRQQGGEHQAGNDFNQPRFNNNQGGGYQNTGYNNNQNGYGQGGGFGGGNQG
NYAGSPQAGNGFNTPKAAPQPAAAPADLDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=900521 R2H34_RS15600 WP_004909838.1 3210999..3211583(-) (ssb) [Acinetobacter sp. 16]
ATGCGTGGTGTGAATAAAGTTATTTTAGTCGGTACTTTGGGTAAAGATCCTGAGACAAAAACCTTTCCAAATGGTGGATC
ACTGACCCAATTTTCGATTGCAACAAGTGAATCGTGGACAGATAAAAATACAGGCGAACGAAAAGAACAAACAGAATGGC
ATCGTATCGTATTGCATAACCGTTTAGGTGAAATTGCACAGCAATACTTACGTAAAGGTTCGAAAGTTTATATCGAAGGT
TCATTGCGTACGCGCCAATGGACAGACCAAAATGGTCAAGAGCGTTACAGCACCGAAATTCGTGGTGACCAAATGCAAAT
GCTCGATTCTCGCCAGCAAGGTGGTGAGCATCAAGCGGGTAATGATTTTAACCAACCGCGTTTTAACAACAATCAAGGCG
GTGGCTACCAAAATACAGGCTATAACAACAACCAAAATGGTTATGGTCAAGGTGGCGGTTTTGGTGGTGGAAATCAGGGC
AATTATGCAGGCAGTCCGCAAGCAGGTAATGGTTTTAATACACCAAAAGCCGCACCTCAACCTGCTGCTGCTCCAGCTGA
CTTAGATGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.246

100

0.526
  ssb Vibrio cholerae strain A1552

44.67

100

0.454
  ssb Neisseria gonorrhoeae MS11

39.583

98.969

0.392
  ssb Neisseria meningitidis MC58

39.583

98.969

0.392