Detailed information NTG0090045

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LDO91_RS16245
• Genome accession: NZ_AP025149
• Coordinates: 3626919..3627788 (+)
• Length: 289 a.a.
• NCBI ID: WP_126606905.1
• Uniprot ID: -
• Organism: Vibrio penaeicida strain IFO 15642
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3621919..3632788

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDO91_RS16225	nadC	3622321..3623208 (+)	888	WP_126606912.1	carboxylating nicotinate-nucleotide diphosphorylase	-
LDO91_RS16230	-	3623503..3623925 (+)	423	WP_126606910.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
LDO91_RS16235	pilB	3623929..3625617 (+)	1689	WP_126606908.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LDO91_RS16240	pilC	3625627..3626859 (+)	1233	WP_126606907.1	type II secretion system F family protein	Machinery gene
LDO91_RS16245	pilD	3626919..3627788 (+)	870	WP_126606905.1	A24 family peptidase	Machinery gene
LDO91_RS16250	coaE	3627840..3628439 (+)	600	WP_126606903.1	dephospho-CoA kinase	-
LDO91_RS16255	zapD	3628477..3629217 (+)	741	WP_126606901.1	cell division protein ZapD	-
LDO91_RS16260	yacG	3629287..3629481 (+)	195	WP_126606900.1	DNA gyrase inhibitor YacG	-
LDO91_RS16265	mutT	3629573..3629986 (-)	414	WP_126606898.1	8-oxo-dGTP diphosphatase MutT	-
LDO91_RS16270	rplS	3630144..3630497 (-)	354	WP_101112478.1	50S ribosomal protein L19	-
LDO91_RS16275	trmD	3630539..3631282 (-)	744	WP_126606897.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
LDO91_RS16280	rimM	3631309..3631863 (-)	555	WP_101112480.1	ribosome maturation factor RimM	-
LDO91_RS16285	rpsP	3631889..3632137 (-)	249	WP_101112481.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32391.40 Da
• Isoelectric Point: 7.5482

>NTDB_id=90045 LDO91_RS16245 WP_126606905.1 3626919..3627788(+) (pilD) [Vibrio penaeicida strain IFO 15642]
MDAFHYYPWLFPLMAAVFGLVIGSFLNVVIYRLPRMMENEWRQECADSFPEYNIAPPTEKLTLSVPRSTCQKCNTQIRIR
DNVPVLSWLLLRGKCRACGTAISARYPLIELLTAGLSFAVANYFGFSYFSIALLFFTFVLIAATFIDFDTLLLPDQLTLP
LMWAGIALSLFEISPVSLTDSVIGAMAGYLCLWSVYYLFKLLTGKEGMGFGDFKLLAALGAWLGWQSLPIIILMSSLVGV
VFGVIQLRLQKKGIEQAFPFGPYLAIAGWVTLLFGKDITSWYFSHFLGI

Nucleotide

• Length: 870 bp

>NTDB_id=90045 LDO91_RS16245 WP_126606905.1 3626919..3627788(+) (pilD) [Vibrio penaeicida strain IFO 15642]
ATGGACGCTTTTCACTACTACCCTTGGCTGTTTCCGTTGATGGCTGCTGTATTTGGGTTGGTCATTGGTAGTTTTTTGAA
TGTCGTGATTTACCGTCTTCCAAGAATGATGGAAAACGAATGGCGACAAGAGTGTGCTGACTCTTTTCCTGAGTACAATA
TTGCGCCTCCAACAGAGAAGCTCACCTTAAGCGTCCCACGTTCTACTTGTCAAAAGTGCAATACACAAATCAGAATTCGG
GATAATGTCCCAGTGCTCAGCTGGTTACTTCTACGCGGTAAATGTCGCGCTTGCGGCACTGCGATCTCAGCTCGTTACCC
TCTTATCGAACTGCTTACCGCAGGTCTCAGCTTTGCTGTTGCAAACTATTTCGGGTTCAGTTATTTCTCTATTGCCCTTC
TATTTTTTACTTTTGTGCTTATCGCAGCCACTTTCATTGATTTCGACACTTTACTTCTCCCCGACCAACTCACCTTACCG
CTTATGTGGGCAGGGATAGCGCTTTCGCTCTTTGAAATCAGCCCTGTATCACTCACTGATTCCGTGATCGGTGCAATGGC
GGGTTACTTGTGTTTATGGAGTGTTTATTACCTGTTTAAGCTGCTTACTGGCAAAGAAGGGATGGGGTTTGGCGATTTCA
AATTACTTGCGGCACTCGGAGCTTGGTTGGGTTGGCAAAGTTTGCCCATTATAATCCTGATGTCATCACTAGTGGGTGTT
GTGTTTGGCGTGATTCAGCTAAGATTGCAGAAAAAAGGCATCGAACAAGCCTTCCCTTTTGGTCCTTACCTTGCCATCGC
TGGTTGGGTTACCCTATTGTTTGGAAAAGACATCACAAGTTGGTATTTTTCACATTTCCTTGGCATTTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-122)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	76.471	100	0.765
pilD	Vibrio cholerae strain A1552	71.181	99.654	0.709
pilD	Acinetobacter nosocomialis M2	53.333	93.426	0.498
pilD	Acinetobacter baumannii D1279779	52.593	93.426	0.491
pilD	Neisseria gonorrhoeae MS11	46.263	97.232	0.45