Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LDO91_RS16240 Genome accession   NZ_AP025149
Coordinates   3625627..3626859 (+) Length   410 a.a.
NCBI ID   WP_126606907.1    Uniprot ID   A0AAV5NT12
Organism   Vibrio penaeicida strain IFO 15642     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3620627..3631859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO91_RS16220 ampD 3621280..3621837 (-) 558 WP_126606913.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  LDO91_RS16225 nadC 3622321..3623208 (+) 888 WP_126606912.1 carboxylating nicotinate-nucleotide diphosphorylase -
  LDO91_RS16230 - 3623503..3623925 (+) 423 WP_126606910.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  LDO91_RS16235 pilB 3623929..3625617 (+) 1689 WP_126606908.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LDO91_RS16240 pilC 3625627..3626859 (+) 1233 WP_126606907.1 type II secretion system F family protein Machinery gene
  LDO91_RS16245 pilD 3626919..3627788 (+) 870 WP_126606905.1 A24 family peptidase Machinery gene
  LDO91_RS16250 coaE 3627840..3628439 (+) 600 WP_126606903.1 dephospho-CoA kinase -
  LDO91_RS16255 zapD 3628477..3629217 (+) 741 WP_126606901.1 cell division protein ZapD -
  LDO91_RS16260 yacG 3629287..3629481 (+) 195 WP_126606900.1 DNA gyrase inhibitor YacG -
  LDO91_RS16265 mutT 3629573..3629986 (-) 414 WP_126606898.1 8-oxo-dGTP diphosphatase MutT -
  LDO91_RS16270 rplS 3630144..3630497 (-) 354 WP_101112478.1 50S ribosomal protein L19 -
  LDO91_RS16275 trmD 3630539..3631282 (-) 744 WP_126606897.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45898.07 Da        Isoelectric Point: 10.3776

>NTDB_id=90044 LDO91_RS16240 WP_126606907.1 3625627..3626859(+) (pilC) [Vibrio penaeicida strain IFO 15642]
MDRSITPRLKLYNFRWKGINSSGKKVSGQFLAYTEVEVRDKLRNQQVQIKKVRKSGISLLDKLSHKVKKKDIMVFTRQMA
TMLGTGVPIVQSLRMVSDNHNKAEMKSILSQVTKSVEAGTPISKALSTSNSLFDSFYTDLIETGEQTGNLSDVFERIATY
QEKSEQLRSKVIKAMIYPVMVLLTAIGVSVLMLKFVIPEFETMFSGFGAELPWFTQQVLKLSHIVQNDLWKMVVAITVLG
IAFKLIRKRSFKFRLRSSRWGLKFPIIGSVFSKAAIAKFSRTLATSFNAGIPILNGLKTSSKTASNLHYQVAIEQVYKDT
AAGMPIYIAMRNTEAFPEMVLQMVMIGEETGSLDDMLNKVANVYEFEVDNTVDNLGKLLEPLIIIFLGVVIGGLVVSMYL
PVFNLMSVLG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=90044 LDO91_RS16240 WP_126606907.1 3625627..3626859(+) (pilC) [Vibrio penaeicida strain IFO 15642]
TTGGATCGTTCAATTACCCCTCGCCTCAAACTGTACAACTTTCGCTGGAAAGGCATTAACAGCTCTGGGAAAAAAGTCTC
TGGGCAATTTCTGGCGTACACCGAGGTTGAAGTACGCGATAAGCTGCGAAACCAACAAGTTCAAATTAAAAAAGTCAGGA
AATCGGGTATCTCGTTGCTCGATAAGCTGAGCCACAAAGTTAAAAAGAAAGACATCATGGTGTTCACTCGCCAAATGGCA
ACCATGCTGGGAACTGGTGTCCCCATCGTTCAATCGTTAAGAATGGTGTCGGATAATCACAACAAAGCAGAGATGAAATC
CATCCTGTCTCAGGTAACCAAATCCGTAGAGGCTGGCACTCCTATCTCTAAAGCACTTAGCACATCCAATAGCCTGTTTG
ACAGCTTTTACACCGACTTGATTGAAACTGGTGAGCAGACTGGTAATTTATCCGATGTTTTTGAGCGTATCGCTACCTAT
CAAGAAAAAAGCGAGCAGCTCCGCTCTAAAGTCATTAAAGCGATGATCTACCCTGTCATGGTTCTTTTGACTGCAATTGG
AGTGTCTGTTCTGATGCTCAAGTTCGTCATACCCGAGTTTGAGACGATGTTTTCGGGGTTTGGCGCTGAATTACCATGGT
TTACTCAACAAGTGCTAAAACTCTCGCACATAGTGCAAAACGACTTGTGGAAGATGGTGGTCGCTATCACCGTACTGGGC
ATTGCTTTTAAACTCATCAGAAAACGATCGTTTAAATTTCGCTTAAGAAGCTCCAGGTGGGGACTGAAATTCCCAATCAT
CGGAAGCGTTTTTAGTAAAGCAGCCATCGCCAAGTTCAGCCGAACACTGGCCACCAGCTTTAATGCTGGTATCCCTATTC
TTAACGGGCTCAAAACCAGCTCTAAGACCGCCAGCAATTTGCATTACCAAGTCGCGATAGAACAGGTTTATAAAGATACA
GCAGCAGGTATGCCTATTTATATCGCCATGAGAAACACGGAAGCTTTTCCAGAAATGGTCTTGCAAATGGTCATGATTGG
AGAAGAAACAGGTTCACTCGACGACATGCTGAATAAAGTCGCGAACGTCTACGAGTTTGAAGTTGATAACACCGTTGATA
ACCTCGGAAAATTACTCGAACCCCTCATTATCATCTTTCTTGGTGTTGTAATTGGTGGGTTAGTCGTCTCTATGTACTTG
CCAGTGTTTAACTTAATGAGTGTATTAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

70.936

99.024

0.702
  pilC Vibrio campbellii strain DS40M4

67.317

100

0.673
  pilC Acinetobacter baumannii D1279779

40.955

97.073

0.398
  pilC Pseudomonas stutzeri DSM 10701

40.955

97.073

0.398
  pilC Acinetobacter baylyi ADP1

40.704

97.073

0.395
  pilG Neisseria gonorrhoeae MS11

39.401

97.805

0.385
  pilG Neisseria meningitidis 44/76-A

39.401

97.805

0.385
  pilC Legionella pneumophila strain ERS1305867

37.897

99.756

0.378

Multiple sequence alignment