Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AABJ99_RS02095 Genome accession   NZ_AP027764
Coordinates   462295..462927 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain 2017-02-2CC     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 457295..467927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ99_RS02070 (VEE76_04010) yhfG 457416..457583 (+) 168 WP_000736860.1 YhfG family protein -
  AABJ99_RS02075 (VEE76_04020) fic 457573..458175 (+) 603 WP_039020599.1 putative adenosine monophosphate-protein transferase Fic -
  AABJ99_RS02080 (VEE76_04030) pabA 458207..458770 (+) 564 WP_000601871.1 aminodeoxychorismate synthase component 2 -
  AABJ99_RS02085 (VEE76_04040) argD 458856..460076 (+) 1221 WP_039020598.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  AABJ99_RS02090 (VEE76_04050) yhfK 460154..462244 (-) 2091 WP_039020597.1 YccS/YhfK family putative transporter -
  AABJ99_RS02095 (VEE76_04060) crp 462295..462927 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  AABJ99_RS02100 (VEE76_04070) yhfA 463230..463634 (+) 405 WP_001148911.1 OsmC family protein -
  AABJ99_RS02105 (VEE76_04080) prkB 463689..464558 (-) 870 WP_032185285.1 phosphoribulokinase -
  AABJ99_RS02110 (VEE76_04090) yheU 464612..464830 (-) 219 WP_000907089.1 YheU family protein -
  AABJ99_RS02115 (VEE76_04100) yheT 464824..465846 (-) 1023 WP_039020596.1 hydrolase -
  AABJ99_RS02120 (VEE76_04110) yheS 465846..467759 (-) 1914 WP_039020595.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=90043 AABJ99_RS02095 WP_000242755.1 462295..462927(-) (crp) [Escherichia coli strain 2017-02-2CC]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=90043 AABJ99_RS02095 WP_000242755.1 462295..462927(-) (crp) [Escherichia coli strain 2017-02-2CC]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ATGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAAGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCATACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTTTCTGCACAGATGGCGCGTCGTTTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCGGATGCCATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGGCGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment