Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R6I16_RS04045 Genome accession   NZ_CP137718
Coordinates   850474..851010 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli isolate FELIX_MS772     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 845474..856010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6I16_RS04025 (R6I16_04025) aphA 845763..846476 (+) 714 WP_001226928.1 acid phosphatase AphA -
  R6I16_RS04030 (R6I16_04030) yjbQ 846587..847003 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  R6I16_RS04035 (R6I16_04035) yjbR 847007..847363 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  R6I16_RS04040 (R6I16_04040) uvrA 847398..850220 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  R6I16_RS04045 (R6I16_04045) ssb 850474..851010 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  R6I16_RS04050 (R6I16_04050) yjcB 851109..851390 (-) 282 WP_001295689.1 YjcB family protein -
  R6I16_RS04055 (R6I16_04055) pdeC 851820..853406 (+) 1587 WP_000019548.1 c-di-GMP phosphodiesterase PdeC -
  R6I16_RS04060 (R6I16_04060) soxS 853409..853732 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  R6I16_RS04065 (R6I16_04065) soxR 853818..854282 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=900321 R6I16_RS04045 WP_000168305.1 850474..851010(+) (ssb) [Escherichia coli isolate FELIX_MS772]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=900321 R6I16_RS04045 WP_000168305.1 850474..851010(+) (ssb) [Escherichia coli isolate FELIX_MS772]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489