Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABEF00_RS20415 Genome accession   NZ_CP156718
Coordinates   4239752..4240288 (-) Length   178 a.a.
NCBI ID   WP_034167446.1    Uniprot ID   -
Organism   Escherichia coli strain EC596     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4234752..4245288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF00_RS20395 soxR 4236480..4236944 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  ABEF00_RS20400 soxS 4237030..4237353 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  ABEF00_RS20405 pdeC 4237356..4238942 (-) 1587 WP_000019544.1 c-di-GMP phosphodiesterase PdeC -
  ABEF00_RS20410 yjcB 4239372..4239653 (+) 282 WP_001295689.1 YjcB family protein -
  ABEF00_RS20415 ssb 4239752..4240288 (-) 537 WP_034167446.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ABEF00_RS20420 uvrA 4240542..4243364 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  ABEF00_RS20425 yjbR 4243399..4243755 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  ABEF00_RS20430 yjbQ 4243759..4244175 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ABEF00_RS20435 aphA 4244286..4244999 (-) 714 WP_001389200.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18987.05 Da        Isoelectric Point: 5.2358

>NTDB_id=900147 ABEF00_RS20415 WP_034167446.1 4239752..4240288(-) (ssb) [Escherichia coli strain EC596]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYITEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=900147 ABEF00_RS20415 WP_034167446.1 4239752..4240288(-) (ssb) [Escherichia coli strain EC596]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACATCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.377

100

0.59
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489