Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABGV10_RS24430 Genome accession   NZ_CP156706
Coordinates   4963372..4963908 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain PKF11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4958372..4968908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGV10_RS24410 soxR 4960101..4960565 (-) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -
  ABGV10_RS24415 soxS 4960651..4960974 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  ABGV10_RS24420 pdeC 4960980..4962563 (-) 1584 WP_000019571.1 c-di-GMP phosphodiesterase PdeC -
  ABGV10_RS24425 yjcB 4962992..4963273 (+) 282 WP_001295689.1 YjcB family protein -
  ABGV10_RS24430 ssb 4963372..4963908 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ABGV10_RS24435 uvrA 4964163..4966985 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  ABGV10_RS24440 yjbR 4967020..4967376 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  ABGV10_RS24445 yjbQ 4967380..4967796 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ABGV10_RS24450 aphA 4967907..4968620 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=900071 ABGV10_RS24430 WP_000168305.1 4963372..4963908(-) (ssb) [Escherichia coli strain PKF11]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=900071 ABGV10_RS24430 WP_000168305.1 4963372..4963908(-) (ssb) [Escherichia coli strain PKF11]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCTGGTCAGGATCGCTACACCACAGAAGTTGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489